Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   TO73_RS04975 Genome accession   NZ_CP010822
Coordinates   923321..923677 (-) Length   118 a.a.
NCBI ID   WP_003045568.1    Uniprot ID   -
Organism   Thermus aquaticus Y51MC23     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 918321..928677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO73_RS04945 (TO73_1033) - 918469..919173 (-) 705 WP_003045556.1 hypothetical protein -
  TO73_RS12630 (TO73_1034) - 919182..919346 (-) 165 WP_003045558.1 hypothetical protein -
  TO73_RS04950 (TO73_1035) - 919547..920401 (+) 855 WP_003045559.1 metal ABC transporter substrate-binding protein -
  TO73_RS04955 (TO73_1036) galK 920409..921452 (+) 1044 WP_003045561.1 galactokinase -
  TO73_RS13785 (TO73_1037) - 921469..921594 (+) 126 WP_003045563.1 hypothetical protein -
  TO73_RS12950 (TO73_1038) - 921676..921882 (+) 207 WP_040684253.1 hypothetical protein -
  TO73_RS04965 (TO73_1039) - 921879..922121 (+) 243 WP_231623759.1 molybdopterin dinucleotide binding domain-containing protein -
  TO73_RS04970 (TO73_1040) - 922118..923194 (-) 1077 WP_003045566.1 TRAP transporter substrate-binding protein -
  TO73_RS04975 (TO73_1041) pilH 923321..923677 (-) 357 WP_003045568.1 response regulator transcription factor Machinery gene
  TO73_RS04980 (TO73_1042) - 923655..926531 (-) 2877 WP_231623760.1 ATP-binding protein -
  TO73_RS04985 (TO73_1043) - 926650..927795 (+) 1146 WP_003045574.1 acyl-CoA dehydrogenase family protein -
  TO73_RS04990 (TO73_1044) - 927808..928551 (+) 744 WP_003045576.1 electron transfer flavoprotein subunit beta/FixA family protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12406.45 Da        Isoelectric Point: 5.1021

>NTDB_id=124666 TO73_RS04975 WP_003045568.1 923321..923677(-) (pilH) [Thermus aquaticus Y51MC23]
MARILLVEDEPLVAHMVRRMLERAGHQVDWAPSGEAALEKLGQAYDLVVCDLVMPGVSGLEVIRQVRAQGSTPVLALSAS
VSAKSQSEAMAAGAQAFLGKPFEGQALLALVERLLAGA

Nucleotide


Download         Length: 357 bp        

>NTDB_id=124666 TO73_RS04975 WP_003045568.1 923321..923677(-) (pilH) [Thermus aquaticus Y51MC23]
ATGGCCAGGATTCTCCTGGTTGAGGACGAGCCCCTGGTGGCCCACATGGTCCGGCGGATGCTGGAACGGGCCGGGCACCA
GGTGGACTGGGCGCCTTCGGGCGAGGCGGCCCTGGAAAAGCTGGGGCAAGCCTATGACCTTGTGGTCTGCGACCTGGTCA
TGCCGGGGGTTTCGGGCCTCGAGGTTATCCGCCAGGTGCGGGCCCAAGGGAGCACCCCGGTCCTGGCCCTCTCGGCCAGC
GTTTCCGCCAAAAGCCAGAGCGAGGCCATGGCCGCCGGGGCCCAGGCCTTCTTGGGCAAGCCCTTTGAAGGCCAGGCCCT
CCTCGCCCTGGTGGAGCGCCTTCTGGCCGGAGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

100

0.373

Multiple sequence alignment