Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   TO73_RS00715 Genome accession   NZ_CP010822
Coordinates   122960..123535 (-) Length   191 a.a.
NCBI ID   WP_003047086.1    Uniprot ID   A0ABM5VIT6
Organism   Thermus aquaticus Y51MC23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 117960..128535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO73_RS00695 (TO73_0148) - 118161..120401 (-) 2241 WP_003047074.1 hypothetical protein -
  TO73_RS00700 (TO73_0149) - 120516..121571 (-) 1056 WP_003047077.1 mechanosensitive ion channel family protein -
  TO73_RS00705 (TO73_0150) hemQ 121614..122366 (+) 753 WP_003047079.1 hydrogen peroxide-dependent heme synthase -
  TO73_RS00710 (TO73_0151) - 122371..122865 (+) 495 WP_003047084.1 chlorite dismutase family protein -
  TO73_RS00715 (TO73_0152) ruvA 122960..123535 (-) 576 WP_003047086.1 Holliday junction branch migration protein RuvA Machinery gene
  TO73_RS00720 (TO73_0153) - 123643..124407 (-) 765 WP_003047090.1 enoyl-CoA hydratase/isomerase family protein -
  TO73_RS00725 (TO73_0154) - 124490..127174 (+) 2685 WP_003047092.1 2-oxoglutarate dehydrogenase E1 component -
  TO73_RS00730 (TO73_0155) odhB 127186..128370 (+) 1185 WP_003047095.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20566.13 Da        Isoelectric Point: 8.5598

>NTDB_id=124650 TO73_RS00715 WP_003047086.1 122960..123535(-) (ruvA) [Thermus aquaticus Y51MC23]
MIRYLKGVVARKEEGSFLLLVGGVGFQVQAPSPFLQGLREGEEVGVHTHLALREEGLFLFGFPEEESLKLFELLLSVSGV
GPKVALALLSALPPRLLAQALAEGDLRLLTSASGVGRRLAERLALELKGKVPKDLLTGEKVESREAEEAILALAALGFKE
GQARSVVLDLLAKNPGAKAQELIKEALRRLR

Nucleotide


Download         Length: 576 bp        

>NTDB_id=124650 TO73_RS00715 WP_003047086.1 122960..123535(-) (ruvA) [Thermus aquaticus Y51MC23]
ATGATTCGCTACTTGAAGGGCGTGGTGGCCAGGAAGGAGGAGGGGAGCTTCCTCCTCCTGGTGGGCGGGGTGGGCTTCCA
GGTCCAGGCCCCAAGCCCCTTCCTCCAGGGCCTGAGGGAGGGGGAGGAGGTGGGGGTCCACACCCACCTGGCCCTTCGGG
AGGAAGGCCTTTTCCTCTTCGGCTTCCCCGAGGAGGAGAGCCTCAAGCTCTTTGAGCTCCTCCTCTCCGTGAGCGGCGTG
GGGCCCAAGGTGGCCCTGGCCCTCCTCTCCGCCCTCCCCCCGAGGCTTCTGGCCCAGGCCCTGGCCGAGGGGGACCTGAG
GCTCCTCACCTCGGCCAGCGGGGTGGGCAGGCGCCTGGCCGAGCGCCTGGCCCTGGAGCTCAAGGGCAAGGTGCCCAAGG
ACCTCCTCACCGGGGAGAAAGTGGAAAGCCGGGAGGCGGAGGAAGCCATCCTGGCCCTGGCCGCCCTGGGCTTCAAGGAG
GGGCAGGCCCGGAGCGTGGTCCTGGACCTCCTGGCCAAAAACCCGGGGGCTAAGGCCCAGGAGCTCATCAAGGAGGCCCT
GAGGCGCCTCCGCTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(146-190)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.158

100

0.361

Multiple sequence alignment