Detailed information NTG0124636

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: SR36_RS19820
• Genome accession: NZ_CP010816
• Coordinates: 4000519..4001544 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain BL21 (TaKaRa)
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3995519..4006544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SR36_RS19790 (SR36_19790)	zapB	3995603..3995848 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
SR36_RS19795 (SR36_19795)	rraA	3995933..3996418 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
SR36_RS19800 (SR36_19800)	menA	3996511..3997437 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
SR36_RS19805 (SR36_19805)	hslU	3997504..3998835 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
SR36_RS19810 (SR36_19810)	hslV	3998845..3999375 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
SR36_RS19815 (SR36_19815)	ftsN	3999468..4000427 (-)	960	WP_000068828.1	cell division protein FtsN	-
SR36_RS19820 (SR36_19820)	cytR	4000519..4001544 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
SR36_RS19825 (SR36_19825)	priA	4001700..4003898 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
SR36_RS19830 (SR36_19830)	rpmE	4004101..4004313 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
SR36_RS19835 (SR36_19835)	-	4004368..4004991 (-)	624	WP_000720774.1	TIGR02117 family protein	-
SR36_RS19840 (SR36_19840)	yiiX	4004998..4005606 (-)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
SR36_RS19845 (SR36_19845)	metJ	4005790..4006107 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=124636 SR36_RS19820 WP_000644904.1 4000519..4001544(-) (cytR) [Escherichia coli strain BL21 (TaKaRa)]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=124636 SR36_RS19820 WP_000644904.1 4000519..4001544(-) (cytR) [Escherichia coli strain BL21 (TaKaRa)]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628