Detailed information NTG0124602

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SR36_RS13325
• Genome accession: NZ_CP010816
• Coordinates: 2675692..2676684 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BL21 (TaKaRa)
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2670692..2681684

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SR36_RS13305 (SR36_13305)	otnK	2671467..2672729 (+)	1263	WP_000590371.1	3-oxo-tetronate kinase	-
SR36_RS13310 (SR36_13310)	ygbL	2672726..2673364 (+)	639	WP_001278994.1	aldolase	-
SR36_RS13315 (SR36_13315)	ygbM	2673369..2674145 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
SR36_RS13320 (SR36_13320)	ygbN	2674234..2675598 (+)	1365	WP_000104459.1	GntP family transporter	-
SR36_RS13325 (SR36_13325)	rpoS	2675692..2676684 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
SR36_RS13330 (SR36_13330)	nlpD	2676747..2677841 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
SR36_RS13335 (SR36_13335)	pcm	2678026..2678652 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
SR36_RS13340 (SR36_13340)	surE	2678646..2679407 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
SR36_RS13345 (SR36_13345)	truD	2679388..2680437 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
SR36_RS13350 (SR36_13350)	ispF	2680434..2680913 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
SR36_RS13355 (SR36_13355)	ispD	2680913..2681623 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=124602 SR36_RS13325 WP_000081550.1 2675692..2676684(-) (rpoS) [Escherichia coli strain BL21 (TaKaRa)]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=124602 SR36_RS13325 WP_000081550.1 2675692..2676684(-) (rpoS) [Escherichia coli strain BL21 (TaKaRa)]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715