Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   VAB027_RS04620 Genome accession   NZ_CP010812
Coordinates   970084..971088 (-) Length   334 a.a.
NCBI ID   WP_046126286.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 965084..976088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS04600 (VAB027_895) glpQ 966556..967623 (+) 1068 WP_080341712.1 glycerophosphodiester phosphodiesterase -
  VAB027_RS04605 (VAB027_896) - 967676..968356 (-) 681 WP_046126284.1 Crp/Fnr family transcriptional regulator -
  VAB027_RS04610 (VAB027_897) - 968496..969227 (-) 732 WP_046126285.1 nucleoside phosphorylase -
  VAB027_RS04615 (VAB027_898) pnuC 969224..969958 (-) 735 WP_000365210.1 nicotinamide riboside transporter PnuC -
  VAB027_RS04620 (VAB027_899) cytR 970084..971088 (-) 1005 WP_046126286.1 substrate-binding domain-containing protein Regulator
  VAB027_RS04625 (VAB027_900) rbsK 971099..972019 (-) 921 WP_001038368.1 ribokinase -
  VAB027_RS04630 (VAB027_901) rbsB 972158..973036 (-) 879 WP_000737177.1 ribose ABC transporter substrate-binding protein RbsB -
  VAB027_RS04635 (VAB027_902) rbsC 973097..974080 (-) 984 WP_000107607.1 ribose ABC transporter permease -
  VAB027_RS04640 (VAB027_903) rbsA 974095..975597 (-) 1503 WP_000189455.1 ribose ABC transporter ATP-binding protein RbsA -
  VAB027_RS04645 (VAB027_904) rbsD 975624..976043 (-) 420 WP_000749918.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37118.73 Da        Isoelectric Point: 7.6777

>NTDB_id=124495 VAB027_RS04620 WP_046126286.1 970084..971088(-) (cytR) [Vibrio cholerae strain 10432-62]
MATMKDIARLAGVSTSTVSHVINKSRFVSDEIAERVNNAAQQLNYAPSALARSLKMNRTKTIGMLVTTSTNPFFGEVVKG
VERSCYHQGYNLILCNTEGDNQRMKASINTLLQKRVDGLLLMCSTLEGERLDVFDRYPDIPIVVMDWGPILFASDKIQDN
SLQGGYMAAKHLIECGHREIGCITGPLIRHQAQMRYEGYKRALAEAGIAINPDWIVESDFECEGGYQAFEKLYQRGKLPS
ALFVSNDMMAMGVIQAASQRGLRVPDDLSLIGYDDVHIAKFMTPALTTIHQPKYRLGKAAVDTLLYRLENPDTTAQVVQL
EPTLVVRNSVRKLG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=124495 VAB027_RS04620 WP_046126286.1 970084..971088(-) (cytR) [Vibrio cholerae strain 10432-62]
ATGGCCACCATGAAGGATATCGCTCGACTTGCTGGCGTCTCCACTTCAACCGTAAGCCATGTGATCAATAAGAGTCGTTT
TGTGAGTGATGAAATTGCTGAGCGGGTGAATAACGCCGCTCAGCAACTCAATTACGCCCCCTCCGCCCTCGCGCGTAGCC
TCAAAATGAACCGCACCAAAACCATTGGCATGTTAGTGACCACCTCGACCAACCCATTTTTTGGTGAAGTGGTAAAAGGC
GTAGAGCGAAGCTGTTATCACCAAGGCTACAACCTAATCTTGTGCAATACCGAAGGGGATAACCAACGCATGAAAGCCAG
CATCAACACCTTGCTGCAAAAGCGTGTCGATGGTTTGCTGCTGATGTGCTCAACCCTTGAGGGTGAAAGGTTGGATGTGT
TTGACCGCTATCCCGACATTCCTATTGTGGTCATGGACTGGGGCCCGATCCTTTTTGCGAGTGACAAAATTCAAGATAAC
TCACTGCAAGGTGGCTACATGGCGGCCAAGCATCTGATTGAATGTGGACACAGAGAAATTGGTTGTATCACTGGTCCGCT
GATTCGCCACCAAGCACAGATGCGTTATGAAGGTTACAAACGTGCGCTCGCGGAAGCGGGAATTGCCATTAATCCAGATT
GGATTGTGGAATCTGACTTCGAGTGTGAAGGCGGCTACCAAGCCTTTGAAAAACTCTATCAGCGTGGCAAATTGCCCAGT
GCTTTGTTTGTTTCTAATGACATGATGGCGATGGGCGTAATTCAAGCCGCCAGCCAAAGAGGTTTACGAGTCCCGGACGA
TCTTTCCTTGATTGGCTACGATGATGTGCATATCGCTAAGTTTATGACCCCGGCGTTAACCACCATCCATCAACCCAAAT
ACCGCCTCGGCAAAGCCGCTGTGGATACCCTGCTTTATCGGTTGGAAAATCCAGACACCACTGCGCAAGTGGTACAGTTA
GAGCCGACTTTAGTGGTGCGTAATAGTGTACGAAAACTCGGCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.253

99.401

0.38
  cytR Vibrio parahaemolyticus RIMD 2210633

37.651

99.401

0.374