Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   VAB027_RS04200 Genome accession   NZ_CP010812
Coordinates   869153..870091 (-) Length   312 a.a.
NCBI ID   WP_046126244.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 864153..875091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS04180 (VAB027_814) vctA 864317..866296 (-) 1980 WP_046126240.1 TonB-dependent iron chelate receptor VctA -
  VAB027_RS04185 (VAB027_815) - 866383..867399 (+) 1017 WP_046126241.1 helix-turn-helix domain-containing protein -
  VAB027_RS04190 (VAB027_816) vctC 867446..868210 (-) 765 WP_046126242.1 iron chelate ABC transporter ATP-binding protein VctC -
  VAB027_RS04195 (VAB027_817) vctG 868213..869163 (-) 951 WP_046126243.1 iron chelate uptake ABC transporter permease subunit VctG -
  VAB027_RS04200 (VAB027_818) ceuB 869153..870091 (-) 939 WP_046126244.1 iron chelate uptake ABC transporter permease subunit VctD Machinery gene
  VAB027_RS04205 (VAB027_819) vctP 870144..871055 (-) 912 WP_000842240.1 iron chelate ABC transporter substrate-binding protein VctP -
  VAB027_RS04210 (VAB027_820) - 871391..872149 (-) 759 WP_046126245.1 class II glutamine amidotransferase -
  VAB027_RS04215 (VAB027_821) - 872742..873014 (+) 273 WP_001259462.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 33842.66 Da        Isoelectric Point: 9.4866

>NTDB_id=124493 VAB027_RS04200 WP_046126244.1 869153..870091(-) (ceuB) [Vibrio cholerae strain 10432-62]
MKKLLLVLVVISFCSLFVGVGNLSLAALFQGDESAWQLLLTSRVPRLLAILLSGAGLSIAGLIMQQVSQNRFASPSTSGM
IECAMLGYVLSLVLFGHGQNLWLIFGVSMLGTLVFVFFIQRIQFKNVIFVPLIGIIFGNVIDSLATFIAYKYDAIQNLSG
WAVANFANLLKGDFELLYIAIPVAIFSYLYAARISAVGMGKDFATNLGLNYQQVMIIGVALVSIMSATVVMIVGQLPFLG
LIVPNLVSLYYGDNLRKNIPRTAIFGAMFVLLCDLVGRVIIFPYEVPISMIISILGGSVFIALILRGQRHAG

Nucleotide


Download         Length: 939 bp        

>NTDB_id=124493 VAB027_RS04200 WP_046126244.1 869153..870091(-) (ceuB) [Vibrio cholerae strain 10432-62]
TTGAAAAAGTTATTGCTTGTTTTAGTTGTTATTAGTTTTTGTTCCCTGTTTGTTGGCGTGGGCAATTTATCCCTCGCAGC
CTTGTTTCAAGGTGATGAGTCAGCTTGGCAGTTACTGCTGACTAGCCGAGTCCCCCGATTATTAGCGATTTTGCTCTCCG
GTGCGGGTTTAAGCATCGCGGGTCTTATCATGCAGCAAGTGAGTCAAAACCGATTTGCCTCACCATCGACTTCCGGCATG
ATTGAGTGTGCCATGCTCGGTTACGTGCTTAGCCTAGTGCTGTTTGGCCATGGTCAAAACCTCTGGTTGATTTTCGGCGT
CTCCATGTTGGGTACGCTGGTCTTTGTGTTTTTCATTCAGCGCATTCAGTTTAAAAACGTCATTTTCGTGCCGCTGATCG
GCATCATTTTTGGCAATGTGATTGACTCTTTGGCGACCTTTATTGCCTACAAATATGATGCTATCCAAAATCTCTCCGGT
TGGGCCGTTGCCAATTTTGCCAACCTGCTTAAAGGGGATTTTGAACTGCTCTATATCGCAATCCCGGTGGCTATTTTCAG
CTATTTGTATGCCGCACGCATTTCTGCCGTGGGGATGGGAAAAGATTTTGCGACCAATCTGGGTTTGAATTATCAACAGG
TCATGATCATCGGTGTGGCCTTAGTCTCCATCATGTCGGCGACCGTGGTCATGATTGTCGGTCAACTGCCTTTCTTGGGT
TTGATTGTGCCTAATCTAGTCAGCCTCTATTACGGCGATAATTTGCGTAAAAATATTCCTCGCACTGCCATTTTTGGGGC
GATGTTCGTGTTGTTATGTGATTTAGTGGGGCGCGTCATCATCTTCCCGTATGAAGTCCCCATCTCTATGATCATCAGTA
TTTTAGGTGGTTCGGTGTTTATTGCCTTGATTTTGCGAGGTCAGCGTCATGCAGGATAG

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(8-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.492

100

0.439

Multiple sequence alignment