Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VAB027_RS02510 Genome accession   NZ_CP010812
Coordinates   559921..560547 (+) Length   208 a.a.
NCBI ID   WP_032477985.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 554921..565547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS02495 (VAB027_492) - 557169..557489 (-) 321 WP_000082212.1 chaperone NapD -
  VAB027_RS02500 (VAB027_493) napF 557516..558010 (-) 495 WP_000228048.1 ferredoxin-type protein NapF -
  VAB027_RS02505 (VAB027_494) narQ 558243..559931 (+) 1689 WP_001994926.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  VAB027_RS02510 (VAB027_495) vraR 559921..560547 (+) 627 WP_032477985.1 response regulator Regulator
  VAB027_RS02515 (VAB027_496) - 560597..561607 (-) 1011 WP_000555352.1 LacI family DNA-binding transcriptional regulator -
  VAB027_RS02520 (VAB027_498) - 561868..562884 (-) 1017 WP_000170557.1 nuclear transport factor 2 family protein -
  VAB027_RS02530 (VAB027_499) - 562981..564276 (-) 1296 WP_000208546.1 MFS transporter -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23160.57 Da        Isoelectric Point: 4.6076

>NTDB_id=124485 VAB027_RS02510 WP_032477985.1 559921..560547(+) (vraR) [Vibrio cholerae strain 10432-62]
MSCRVLLVDDHPLMRRGIKQLLSFEEEFEVVAEAGNGAEAIALAHDLQPDLILLDLNMKGMSGLDTLTALRTDECDAYVV
ILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAK
GYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLERYANA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=124485 VAB027_RS02510 WP_032477985.1 559921..560547(+) (vraR) [Vibrio cholerae strain 10432-62]
ATGAGTTGTAGAGTCCTTTTAGTGGATGATCACCCGCTGATGCGCCGTGGTATCAAGCAGTTATTGAGTTTTGAAGAAGA
GTTTGAAGTCGTCGCTGAAGCCGGTAATGGCGCAGAAGCCATTGCATTAGCTCACGATTTGCAACCAGATTTAATCTTGC
TCGATCTCAATATGAAAGGGATGTCGGGATTGGATACGCTGACTGCGCTGCGCACCGATGAGTGTGACGCTTATGTGGTG
ATCCTTACGGTTTCAGACAGCGCCGCAGATATTGAAGCATTAGTCAAAGCGGGGGCTGATGGCTATCTCCTCAAAGATAC
TGAGCCGGATCAACTGGTGGCGCTGCTTAAACAAGCCATGCAAGGCGAAAAAGCCTTTAGTGAGTCGGTCGAACGTTACC
TTTTAAATCGCGAGCATACGAGTAATCCTTTTGAAGCACTAACGGAACGTGAAATGCAAATTATGTCAGAAGTGGCAAAG
GGTTATCGCAATCGACAAATCGCCGACCGCCTGTTTATTTCTGAATCTACCGTCAAAGTGCACATGAAAAGCTTACTGAA
AAAGCTCGATGTGCCGTCACGCACCGCCGCCACGATTCTTTATTTAGAGCGGTATGCTAATGCTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(146-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

96.154

0.385