Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VAA049_RS11560 Genome accession   NZ_CP010811
Coordinates   2546472..2547095 (+) Length   207 a.a.
NCBI ID   WP_001277850.1    Uniprot ID   -
Organism   Vibrio cholerae strain 1154-74     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2541472..2552095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS11545 (VAA049_2272) - 2543720..2544040 (-) 321 WP_000082211.1 chaperone NapD -
  VAA049_RS11550 (VAA049_2273) napF 2544067..2544561 (-) 495 WP_046121946.1 ferredoxin-type protein NapF -
  VAA049_RS11555 (VAA049_2274) narQ 2544794..2546482 (+) 1689 WP_046121947.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  VAA049_RS11560 (VAA049_2275) vraR 2546472..2547095 (+) 624 WP_001277850.1 response regulator Regulator
  VAA049_RS11565 (VAA049_2276) - 2547311..2548681 (+) 1371 WP_046121948.1 L-serine ammonia-lyase -
  VAA049_RS11570 (VAA049_2277) dcuC 2548779..2550146 (-) 1368 WP_000891426.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23075.42 Da        Isoelectric Point: 4.5340

>NTDB_id=124420 VAA049_RS11560 WP_001277850.1 2546472..2547095(+) (vraR) [Vibrio cholerae strain 1154-74]
MSCRVLLVDDHPLMRRGINQLLSFEEEFEVVAEAGNGAEAIALAHDLQPDLILLDLNMKGMSGLDTLTALRTDECDAYVV
ILTVSDSAADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVERYLLNREHTSNPFEALTEREMQIMSEVAK
GYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLERYAN

Nucleotide


Download         Length: 624 bp        

>NTDB_id=124420 VAA049_RS11560 WP_001277850.1 2546472..2547095(+) (vraR) [Vibrio cholerae strain 1154-74]
ATGAGTTGTAGAGTCCTTTTAGTGGATGATCACCCGCTGATGCGCCGTGGTATCAATCAACTATTGAGTTTTGAAGAAGA
ATTTGAGGTGGTTGCCGAAGCGGGGAATGGGGCTGAAGCGATTGCTCTGGCGCATGATCTACAACCGGACTTGATTCTGC
TCGATCTCAATATGAAAGGGATGTCGGGATTGGATACGCTGACTGCGCTGCGCACCGATGAGTGTGACGCTTATGTGGTG
ATCCTCACGGTTTCAGACAGCGCCGCAGATATTGAAGCATTAGTCAAAGCGGGGGCTGATGGCTATCTCCTCAAAGATAC
TGAGCCAGATCAACTGGTGGCGCTGCTTAAACAAGCCATGCAAGGCGAAAAAGCCTTTAGTGAGTCGGTCGAACGTTACC
TTTTAAATCGCGAGCATACGAGTAATCCTTTTGAAGCACTAACGGAACGCGAAATGCAAATTATGTCAGAGGTGGCAAAG
GGTTATCGCAATCGACAAATCGCCGACCGCCTGTTTATTTCTGAATCTACCGTCAAAGTGCACATGAAAAGCTTACTGAA
AAAGCTTGATGTGCCGTCACGCACCGCCGCCACGATTCTTTATCTAGAGCGGTATGCTAACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-200)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40

96.618

0.386

Multiple sequence alignment