Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   VAA049_RS09005 Genome accession   NZ_CP010811
Coordinates   1951291..1952304 (-) Length   337 a.a.
NCBI ID   WP_046121786.1    Uniprot ID   -
Organism   Vibrio cholerae strain 1154-74     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1946291..1957304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS08990 (VAA049_1774) glpQ 1947622..1948689 (+) 1068 WP_001965444.1 glycerophosphodiester phosphodiesterase -
  VAA049_RS08995 (VAA049_1775) - 1948988..1950136 (-) 1149 WP_001902615.1 pepsin-like aspartic protease -
  VAA049_RS09000 (VAA049_1776) - 1950233..1951165 (-) 933 WP_001293477.1 GGDEF domain-containing protein -
  VAA049_RS09005 (VAA049_1777) cytR 1951291..1952304 (-) 1014 WP_046121786.1 substrate-binding domain-containing protein Regulator
  VAA049_RS09010 (VAA049_1778) rbsK 1952315..1953235 (-) 921 WP_001038368.1 ribokinase -
  VAA049_RS09015 (VAA049_1779) rbsB 1953374..1954252 (-) 879 WP_032480456.1 ribose ABC transporter substrate-binding protein RbsB -
  VAA049_RS09020 (VAA049_1780) rbsC 1954313..1955296 (-) 984 WP_000107607.1 ribose ABC transporter permease -
  VAA049_RS09025 (VAA049_1781) rbsA 1955311..1956813 (-) 1503 WP_033929134.1 ribose ABC transporter ATP-binding protein RbsA -
  VAA049_RS09030 (VAA049_1782) rbsD 1956840..1957259 (-) 420 WP_000749918.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 37400.02 Da        Isoelectric Point: 7.0558

>NTDB_id=124413 VAA049_RS09005 WP_046121786.1 1951291..1952304(-) (cytR) [Vibrio cholerae strain 1154-74]
MATMKDIARLAGVSTSTVSHVINKSRFVSDEIAERVNNAAQQLNYAPSALARSLKMNRTKTIGMLVTTSTNPFFGEVVKG
VERSCYHQGYNLILCNTEGDNQRMKASINTLLQKRVDGLLLMCSTLEGERLDVFDRYPDIPIVVMDWGPILFASDKIQDN
SLQGGYMAAKHLIECGHKEIGCITGPLIRHQAQMRYEGYKRALAEAGIAINPDWIVESDFECEGGYQAFEKLYQRGKLPS
ALFVSNDMMAMGVIQAANQRGLRVPDDLSLIGYDDVHIAKFMTPALTTIHQPKYRLGKAAVDTLLYRLENPDTTAQVVQL
EPTLVVRSSVCSLNKCD

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=124413 VAA049_RS09005 WP_046121786.1 1951291..1952304(-) (cytR) [Vibrio cholerae strain 1154-74]
ATGGCCACCATGAAGGATATCGCTCGACTTGCTGGCGTCTCCACTTCAACCGTAAGCCATGTGATCAATAAGAGTCGTTT
TGTGAGTGATGAAATTGCTGAGCGGGTGAATAACGCCGCTCAGCAACTCAATTACGCCCCCTCCGCTCTCGCGCGTAGCC
TCAAAATGAACCGCACCAAAACCATTGGCATGTTAGTGACCACCTCGACCAACCCATTTTTTGGTGAAGTGGTAAAAGGT
GTAGAGCGAAGCTGTTATCACCAAGGCTACAACCTAATCTTGTGCAATACCGAAGGGGATAACCAACGCATGAAAGCCAG
CATCAACACCTTGCTGCAAAAGCGTGTCGATGGTTTGCTGCTGATGTGCTCAACCCTTGAGGGTGAAAGGTTGGATGTGT
TTGACCGCTATCCCGACATCCCGATTGTGGTCATGGACTGGGGTCCGATCCTGTTTGCGAGTGACAAAATTCAAGACAAC
TCACTGCAAGGTGGCTACATGGCGGCCAAGCATCTGATTGAGTGTGGGCATAAAGAGATTGGTTGTATCACAGGTCCGCT
GATTCGCCACCAAGCACAGATGCGTTATGAAGGTTACAAACGTGCGCTCGCGGAAGCGGGAATTGCCATTAATCCAGATT
GGATTGTGGAATCTGACTTCGAGTGTGAAGGTGGTTACCAAGCCTTTGAAAAACTCTATCAGCGTGGCAAATTGCCCAGT
GCTTTGTTTGTCTCTAATGACATGATGGCGATGGGCGTAATTCAAGCGGCTAACCAGCGAGGTTTGCGAGTGCCGGACGA
TCTCTCCCTGATTGGCTACGATGATGTGCATATCGCTAAGTTTATGACCCCGGCGTTAACCACCATCCATCAACCCAAAT
ACCGCCTCGGCAAAGCCGCTGTAGATACGCTGCTTTATCGGTTGGAAAATCCAGACACCACTGCGCAAGTTGTGCAATTA
GAGCCGACTTTAGTGGTGCGTAGCAGTGTGTGTTCCTTAAATAAGTGCGATTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-330)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.166

100

0.383
  cytR Vibrio parahaemolyticus RIMD 2210633

37.952

98.516

0.374

Multiple sequence alignment