Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VAA049_RS05190 Genome accession   NZ_CP010811
Coordinates   1105811..1106425 (+) Length   204 a.a.
NCBI ID   WP_000580350.1    Uniprot ID   A0ABX9FGD2
Organism   Vibrio cholerae strain 1154-74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100811..1111425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS05165 (VAA049_1023) - 1100998..1102212 (-) 1215 WP_046121497.1 EAL and HDOD domain-containing protein -
  VAA049_RS05170 (VAA049_1024) lpxH 1102308..1103048 (-) 741 WP_000556995.1 UDP-2,3-diacylglucosamine diphosphatase -
  VAA049_RS05175 (VAA049_1025) - 1103089..1103583 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  VAA049_RS05180 (VAA049_1026) cysS 1103729..1105108 (+) 1380 WP_000913178.1 cysteine--tRNA ligase -
  VAA049_RS05185 (VAA049_1027) ruvC 1105196..1105717 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  VAA049_RS05190 (VAA049_1028) ruvA 1105811..1106425 (+) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  VAA049_RS05195 (VAA049_1029) ruvB 1106481..1107485 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VAA049_RS05200 (VAA049_1030) cydA 1107944..1109530 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  VAA049_RS05205 (VAA049_1031) cydB 1109548..1110684 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  VAA049_RS05210 (VAA049_1032) cydX 1110697..1110804 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  VAA049_RS05215 ybgE 1110797..1111114 (+) 318 WP_001286620.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22049.75 Da        Isoelectric Point: 5.0954

>NTDB_id=124401 VAA049_RS05190 WP_000580350.1 1105811..1106425(+) (ruvA) [Vibrio cholerae strain 1154-74]
MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=124401 VAA049_RS05190 WP_000580350.1 1105811..1106425(+) (ruvA) [Vibrio cholerae strain 1154-74]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCGATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTTGTGC
GGGAAGATGCGCAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCCAAAATGGGGCTAGCAATACTTTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACTCCTGCAACCGATGCGGCACCTGTCGATTCTACGCCCGTGATTGCCCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAACCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTAGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment