Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HL41_RS09575 Genome accession   NZ_CP008796
Coordinates   94328..94957 (+) Length   209 a.a.
NCBI ID   WP_200870712.1    Uniprot ID   -
Organism   Thermodesulfobacterium commune DSM 2178     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 89328..99957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HL41_RS00480 (HL41_00490) lysA 89629..90885 (-) 1257 WP_038063113.1 diaminopimelate decarboxylase -
  HL41_RS09460 - 91057..91212 (+) 156 WP_158506209.1 hypothetical protein -
  HL41_RS00485 (HL41_00505) - 91537..92430 (+) 894 WP_038063116.1 AAA family ATPase -
  HL41_RS00490 (HL41_00510) - 92430..94268 (+) 1839 WP_038063119.1 hypothetical protein -
  HL41_RS09575 pilR 94328..94957 (+) 630 WP_200870712.1 sigma-54-dependent Fis family transcriptional regulator Regulator
  HL41_RS09580 - 95162..95338 (+) 177 WP_200870713.1 helix-turn-helix domain-containing protein -
  HL41_RS00500 (HL41_00520) - 95360..97222 (+) 1863 WP_038063122.1 hypothetical protein -
  HL41_RS00505 (HL41_00525) - 97230..98579 (+) 1350 WP_038063125.1 sigma-54-dependent Fis family transcriptional regulator -
  HL41_RS00510 (HL41_00530) flgB 98583..98981 (+) 399 WP_038063127.1 flagellar basal body rod protein FlgB -
  HL41_RS00515 (HL41_00535) flgC 98984..99403 (+) 420 WP_038063129.1 flagellar basal body rod protein FlgC -
  HL41_RS00520 (HL41_00540) fliE 99421..99714 (+) 294 WP_038063132.1 flagellar hook-basal body complex protein FliE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23531.59 Da        Isoelectric Point: 9.8557

>NTDB_id=124273 HL41_RS09575 WP_200870712.1 94328..94957(+) (pilR) [Thermodesulfobacterium commune DSM 2178]
MSYLIETHNPVMKEVYQLAKKVAPSSSTVLILGESGTGKEVLAKYIHFNSKRQGPFVAINCAAIPEELLEAELFGYEKGA
FTGAIKTKPGKFEIANRGTLFLDEIGDLSAKLQAKLLRVLQERQVERLGGEHPIKVDVRIIAATNKDLEKEVEAGRFRED
LFYRLNVIPIKIPPLRKRKEDIVLLANFFLKKVCEREGVPLKRLSEKTV

Nucleotide


Download         Length: 630 bp        

>NTDB_id=124273 HL41_RS09575 WP_200870712.1 94328..94957(+) (pilR) [Thermodesulfobacterium commune DSM 2178]
ATGAGTTATTTGATAGAAACTCACAATCCGGTGATGAAAGAAGTCTATCAGTTGGCCAAAAAGGTAGCGCCTTCAAGTAG
TACTGTCCTTATTTTAGGAGAATCAGGCACAGGAAAGGAGGTTCTGGCTAAATACATACATTTTAACAGCAAGCGTCAGG
GGCCCTTTGTGGCGATTAATTGTGCTGCCATACCAGAAGAGTTGCTTGAGGCAGAGCTTTTTGGCTATGAAAAAGGGGCT
TTTACCGGTGCTATCAAGACTAAACCTGGTAAGTTTGAAATAGCTAACAGAGGGACGCTATTTCTTGATGAAATAGGTGA
TTTAAGCGCAAAACTTCAGGCAAAACTCTTAAGGGTGCTTCAGGAAAGACAAGTAGAAAGGTTAGGGGGAGAACATCCTA
TCAAAGTAGACGTAAGGATTATTGCTGCCACCAACAAGGATTTAGAAAAAGAGGTGGAAGCTGGTAGGTTTAGAGAAGAT
TTGTTCTACAGACTCAACGTTATACCTATAAAAATACCTCCTCTCAGAAAAAGAAAAGAAGACATAGTTCTTTTAGCCAA
TTTTTTTCTTAAAAAGGTGTGCGAAAGAGAAGGAGTTCCGTTAAAAAGATTGTCTGAAAAGACTGTTTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(7-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.261

95.215

0.498
  luxO Vibrio cholerae strain A1552

50

95.694

0.478
  pilR Acinetobacter baumannii strain A118

49.468

89.952

0.445

Multiple sequence alignment