Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   MTVDSCJ20_RS07295 Genome accession   NZ_CP008787
Coordinates   1420868..1421179 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj20     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415868..1426179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCJ20_RS07275 (MTVDSCj20_1436) ctsE 1416737..1418296 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  MTVDSCJ20_RS07280 (MTVDSCj20_1437) ctsX 1418286..1418873 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  MTVDSCJ20_RS07285 (MTVDSCj20_1438) ctsP 1418877..1419485 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  MTVDSCJ20_RS07290 (MTVDSCj20_1439) ctsD 1419478..1420890 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  MTVDSCJ20_RS07295 (MTVDSCj20_1440) ctsR 1420868..1421179 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  MTVDSCJ20_RS07300 (MTVDSCj20_1441) nifJ 1421203..1424763 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  MTVDSCJ20_RS07305 (MTVDSCj20_1442) - 1424856..1425497 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=124263 MTVDSCJ20_RS07295 WP_002862131.1 1420868..1421179(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain MTVDSCj20]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=124263 MTVDSCJ20_RS07295 WP_002862131.1 1420868..1421179(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain MTVDSCj20]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment