Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SP5448_RS00655 Genome accession   NZ_CP008776
Coordinates   106323..106718 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain 5448     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 101323..111718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP5448_RS00625 (SP5448_00650) - 102188..102496 (+) 309 WP_010921804.1 hypothetical protein -
  SP5448_RS00630 (SP5448_00655) proC 102579..103349 (-) 771 WP_010921805.1 pyrroline-5-carboxylate reductase -
  SP5448_RS00635 (SP5448_00660) pepA 103397..104464 (-) 1068 WP_010921806.1 glutamyl aminopeptidase -
  SP5448_RS00640 (SP5448_00670) - 104929..105213 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  SP5448_RS00645 (SP5448_00675) - 105210..105527 (+) 318 WP_011285355.1 thioredoxin family protein -
  SP5448_RS00650 (SP5448_00680) ytpR 105545..106171 (+) 627 WP_011285356.1 YtpR family tRNA-binding protein -
  SP5448_RS00655 (SP5448_00685) ssbA 106323..106718 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  SP5448_RS00660 (SP5448_00690) - 106978..107619 (-) 642 WP_010921807.1 deoxynucleoside kinase -
  SP5448_RS00665 (SP5448_00695) dusB 107639..108616 (-) 978 WP_002987812.1 tRNA dihydrouridine synthase DusB -
  SP5448_RS00670 (SP5448_00700) hslO 108603..109475 (-) 873 WP_010921808.1 Hsp33 family molecular chaperone HslO -
  SP5448_RS00675 (SP5448_00705) rofA 109622..111115 (-) 1494 WP_010921809.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=124120 SP5448_RS00655 WP_003053955.1 106323..106718(+) (ssbA) [Streptococcus pyogenes strain 5448]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=124120 SP5448_RS00655 WP_003053955.1 106323..106718(+) (ssbA) [Streptococcus pyogenes strain 5448]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment