Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   EG09_RS22405 Genome accession   NZ_CP010555
Coordinates   4888132..4888656 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain FRD1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4883132..4893656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG09_RS22385 (EG09_22385) - 4883202..4885670 (-) 2469 WP_025297613.1 penicillin-binding protein 1A -
  EG09_RS22390 (EG09_22390) pilM 4885855..4886919 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  EG09_RS22395 (EG09_22395) pilN 4886919..4887515 (+) 597 WP_015647905.1 type 4a pilus biogenesis protein PilN Machinery gene
  EG09_RS22400 (EG09_22400) pilO 4887512..4888135 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  EG09_RS22405 (EG09_22405) comL/pilP 4888132..4888656 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  EG09_RS22410 (EG09_22410) pilQ 4888710..4890854 (+) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  EG09_RS22415 (EG09_22415) aroK 4890866..4891384 (+) 519 WP_003095833.1 shikimate kinase AroK -
  EG09_RS22420 (EG09_22420) aroB 4891434..4892540 (+) 1107 WP_003162482.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=124112 EG09_RS22405 WP_003095836.1 4888132..4888656(+) (comL/pilP) [Pseudomonas aeruginosa strain FRD1]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=124112 EG09_RS22405 WP_003095836.1 4888132..4888656(+) (comL/pilP) [Pseudomonas aeruginosa strain FRD1]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362