Detailed information NTG0124072

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EG09_RS12170
• Genome accession: NZ_CP010555
• Coordinates: 2672484..2673488 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain FRD1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2667484..2678488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG09_RS12155 (EG09_12155)	-	2667968..2668974 (+)	1007	Protein_2434	TolB family protein	-
EG09_RS12160 (EG09_12160)	mutS	2669100..2671667 (+)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
EG09_RS12165 (EG09_12165)	fdxA	2671734..2672057 (+)	324	WP_003092272.1	ferredoxin FdxA	-
EG09_RS12170 (EG09_12170)	rpoS	2672484..2673488 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EG09_RS12175 (EG09_12175)	-	2673593..2674486 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
EG09_RS12180 (EG09_12180)	-	2674532..2675167 (-)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EG09_RS12185 (EG09_12185)	surE	2675200..2675949 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EG09_RS12190 (EG09_12190)	truD	2675937..2677004 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
EG09_RS12195 (EG09_12195)	ispF	2677001..2677474 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EG09_RS12200 (EG09_12200)	fghA	2677545..2678396 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=124072 EG09_RS12170 WP_003113871.1 2672484..2673488(-) (rpoS) [Pseudomonas aeruginosa strain FRD1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=124072 EG09_RS12170 WP_003113871.1 2672484..2673488(-) (rpoS) [Pseudomonas aeruginosa strain FRD1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653