Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   EG09_RS09815 Genome accession   NZ_CP010555
Coordinates   2169882..2170211 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain FRD1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2164882..2175211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG09_RS09800 (EG09_09800) uvrB 2166269..2168281 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  EG09_RS09805 (EG09_09805) - 2168469..2169665 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  EG09_RS09815 (EG09_09815) comEA/comE1 2169882..2170211 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  EG09_RS09820 (EG09_09820) - 2170402..2172399 (-) 1998 WP_031757889.1 polysaccharide biosynthesis protein -
  EG09_RS09825 (EG09_09825) - 2172434..2173453 (-) 1020 WP_003158833.1 MraY family glycosyltransferase -
  EG09_RS09830 (EG09_09830) - 2173455..2174411 (-) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=124067 EG09_RS09815 WP_003104586.1 2169882..2170211(-) (comEA/comE1) [Pseudomonas aeruginosa strain FRD1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=124067 EG09_RS09815 WP_003104586.1 2169882..2170211(-) (comEA/comE1) [Pseudomonas aeruginosa strain FRD1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment