Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SHYC_RS03990 Genome accession   NZ_CP008747
Coordinates   874092..874814 (-) Length   240 a.a.
NCBI ID   WP_039644708.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain ATCC 11249     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 869092..879814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHYC_RS03970 (SHYC_04055) - 870044..870679 (+) 636 WP_039644703.1 redox-sensing transcriptional repressor Rex -
  SHYC_RS03975 (SHYC_04060) - 870859..871941 (+) 1083 WP_039644704.1 YeeE/YedE family protein -
  SHYC_RS03980 (SHYC_04065) - 871966..872190 (+) 225 WP_039644706.1 sulfurtransferase TusA family protein -
  SHYC_RS03985 (SHYC_04070) - 872529..874028 (+) 1500 WP_039644707.1 sucrose-6-phosphate hydrolase -
  SHYC_RS03990 (SHYC_04075) agrA 874092..874814 (-) 723 WP_039644708.1 quorum-sensing response regulator AgrA Regulator
  SHYC_RS03995 (SHYC_04080) agrC 874828..876126 (-) 1299 WP_039644710.1 quorum-sensing sensor histidine kinase AgrC -
  SHYC_RS04000 (SHYC_04085) agrD 876156..876290 (-) 135 WP_039644712.1 cyclic lactone autoinducer peptide AgrD -
  SHYC_RS04005 (SHYC_04090) - 876293..876856 (-) 564 WP_039644714.1 accessory gene regulator AgrB -
  SHYC_RS04010 (SHYC_04100) - 877506..878303 (-) 798 WP_039644715.1 carbon-nitrogen family hydrolase -
  SHYC_RS12415 (SHYC_04105) - 878469..879593 (+) 1125 WP_052257803.1 hypothetical protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28228.36 Da        Isoelectric Point: 5.4121

>NTDB_id=124022 SHYC_RS03990 WP_039644708.1 874092..874814(-) (agrA) [Staphylococcus hyicus strain ATCC 11249]
MKILICEDDPKQRERMESIIQNYIMIEEKPMEIEISTSDPYALLEASKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDIDELRTRIIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDSRFFRCHNSFVLNRHNISHVDAKERIVYFKNDEFCYVSVRNIKKIKK

Nucleotide


Download         Length: 723 bp        

>NTDB_id=124022 SHYC_RS03990 WP_039644708.1 874092..874814(-) (agrA) [Staphylococcus hyicus strain ATCC 11249]
TTGAAGATATTAATTTGTGAGGATGACCCTAAACAAAGAGAGCGAATGGAATCCATCATTCAAAATTATATTATGATTGA
AGAAAAGCCCATGGAAATTGAAATTTCTACAAGTGACCCATACGCGTTACTTGAGGCTTCAAAAAACATGACCGATATTG
GGTGTTACTTTTTAGATATCCAATTAGAATCTGATATTAATGGCATTAAGCTTGGCAGTGAAATTAGAAAACATGATCCC
GTAGGTAATATTATTTTTGTGACAAGCCATAGTGAATTAACGTATTTGACATTCGTTTATAAACTTGCTGCTATGGATTT
TATATTCAAAGACGATATTGATGAATTACGAACGCGCATTATTGATTGTCTTGAAACTGCGCTCAAACGGTTGGATTTAC
TTACTAAAGATAACACTGTAGAAACAATGGAATTAAAACAAGGCAGTAATTCTGTATATGTCAACTATGATGATGTCATG
TTTTTTGAATCTTCACCTAAGTCACATCGACTCATAGCTCACTTAGATAATCGACAAATTGAGTTTTATGGTAATTTAAG
GGAACTTGCACAAATTGATAGTCGCTTTTTTAGATGCCATAACAGTTTTGTTTTAAATCGTCATAACATCTCTCATGTTG
ATGCTAAAGAGCGTATTGTTTATTTTAAAAATGATGAGTTTTGCTATGTGTCAGTTAGAAATATAAAAAAAATCAAGAAA
TAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813

Multiple sequence alignment