Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSA3335_RS21565 Genome accession   NZ_CP008742
Coordinates   4528259..4528936 (-) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas savastanoi pv. savastanoi NCPPB 3335     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4523259..4533936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSA3335_RS21540 (PSA3335_20590) murB 4524818..4525837 (-) 1020 WP_002552681.1 UDP-N-acetylmuramate dehydrogenase -
  PSA3335_RS21545 (PSA3335_20595) kdsB 4525872..4526636 (-) 765 WP_002552680.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSA3335_RS21550 (PSA3335_20600) - 4526633..4526818 (-) 186 WP_002552679.1 Trm112 family protein -
  PSA3335_RS21555 (PSA3335_20605) lpxK 4526836..4527831 (-) 996 WP_002552678.1 tetraacyldisaccharide 4'-kinase -
  PSA3335_RS21560 (PSA3335_20610) - 4527831..4528262 (-) 432 WP_002552677.1 ExbD/TolR family protein -
  PSA3335_RS21565 (PSA3335_20615) exbB 4528259..4528936 (-) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSA3335_RS21570 (PSA3335_20620) - 4529018..4531223 (-) 2206 Protein_4086 DNA internalization-related competence protein ComEC/Rec2 -
  PSA3335_RS21575 (PSA3335_20625) - 4531360..4532148 (-) 789 WP_002552673.1 ABC transporter permease -
  PSA3335_RS21580 (PSA3335_20630) - 4532145..4533077 (-) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  PSA3335_RS21585 (PSA3335_20635) - 4533261..4533884 (-) 624 WP_031594866.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=123993 PSA3335_RS21565 WP_002552676.1 4528259..4528936(-) (exbB) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=123993 PSA3335_RS21565 WP_002552676.1 4528259..4528936(-) (exbB) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTACTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment