Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   C645_RS04125 Genome accession   NZ_CP008740
Coordinates   793793..794089 (-) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae 2019     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 788793..799089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS04095 (C645_04155) - 788825..789388 (-) 564 WP_005690125.1 DNA-3-methyladenine glycosylase I -
  C645_RS04100 (C645_04160) - 789497..789706 (-) 210 Protein_769 DUF3800 domain-containing protein -
  C645_RS04105 (C645_04165) aroE 789758..790564 (-) 807 WP_046067651.1 shikimate dehydrogenase -
  C645_RS04110 (C645_04170) - 790568..791119 (-) 552 WP_046067652.1 Sua5/YciO/YrdC/YwlC family protein -
  C645_RS04115 (C645_04175) - 791135..791683 (-) 549 WP_046067653.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  C645_RS04120 (C645_04180) - 791693..793609 (-) 1917 WP_046067654.1 ABC transporter ATP-binding protein -
  C645_RS04125 (C645_04185) HI0659 793793..794089 (-) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  C645_RS04130 (C645_04190) - 794082..794264 (-) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  C645_RS04135 - 794534..797590 (-) 3057 WP_154232031.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  C645_RS10600 - 797583..797657 (-) 75 Protein_777 carbamate kinase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=123964 C645_RS04125 WP_005650837.1 793793..794089(-) (HI0659) [Haemophilus influenzae 2019]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=123964 C645_RS04125 WP_005650837.1 793793..794089(-) (HI0659) [Haemophilus influenzae 2019]
ATGAATAAAATTAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment