Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C645_RS03855 Genome accession   NZ_CP008740
Coordinates   746411..747064 (+) Length   217 a.a.
NCBI ID   WP_014551147.1    Uniprot ID   A0AAJ8WEC8
Organism   Haemophilus influenzae 2019     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 741411..752064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS03830 (C645_03890) - 741829..742833 (-) 1005 WP_005658947.1 ornithine carbamoyltransferase -
  C645_RS03835 (C645_03895) - 743236..744054 (+) 819 WP_005658945.1 Cof-type HAD-IIB family hydrolase -
  C645_RS03840 (C645_03900) crcB 744054..744440 (+) 387 WP_005658943.1 fluoride efflux transporter CrcB -
  C645_RS03845 (C645_03905) recX 744437..744895 (-) 459 WP_005651075.1 recombination regulator RecX -
  C645_RS03850 (C645_03910) recA 744974..746038 (-) 1065 WP_005654959.1 recombinase RecA Machinery gene
  C645_RS03855 (C645_03915) sxy/tfoX 746411..747064 (+) 654 WP_014551147.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=123963 C645_RS03855 WP_014551147.1 746411..747064(+) (sxy/tfoX) [Haemophilus influenzae 2019]
MNIKDEHIESVCSLLDRLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=123963 C645_RS03855 WP_014551147.1 746411..747064(+) (sxy/tfoX) [Haemophilus influenzae 2019]
ATGAATATAAAGGATGAGCATATAGAGAGCGTTTGCTCTTTGTTAGATCGGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACTACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(15-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.157

100

0.982

Multiple sequence alignment