Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SXYLSMQ121_RS07765 Genome accession   NZ_CP008724
Coordinates   1644065..1645114 (-) Length   349 a.a.
NCBI ID   WP_042362814.1    Uniprot ID   A0A5R9B6Z0
Organism   Staphylococcus xylosus strain SMQ-121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1639065..1650114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYLSMQ121_RS07750 (SXYLSMQ121_1516) - 1640650..1641438 (-) 789 WP_042362811.1 TIGR00282 family metallophosphoesterase -
  SXYLSMQ121_RS07755 (SXYLSMQ121_1517) - 1641605..1641820 (+) 216 WP_042362812.1 hypothetical protein -
  SXYLSMQ121_RS07760 (SXYLSMQ121_1518) rny 1642023..1643582 (-) 1560 WP_042362813.1 ribonuclease Y -
  SXYLSMQ121_RS07765 (SXYLSMQ121_1519) recA 1644065..1645114 (-) 1050 WP_042362814.1 recombinase RecA Machinery gene
  SXYLSMQ121_RS07770 (SXYLSMQ121_1520) - 1645288..1646430 (-) 1143 WP_042362815.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  SXYLSMQ121_RS07775 (SXYLSMQ121_1521) pgsA 1646633..1647211 (-) 579 WP_042362816.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SXYLSMQ121_RS07780 (SXYLSMQ121_1522) - 1647263..1647655 (-) 393 WP_029377447.1 helix-turn-helix domain-containing protein -
  SXYLSMQ121_RS07785 (SXYLSMQ121_1523) - 1647686..1648516 (-) 831 WP_029377448.1 YmfK family protein -
  SXYLSMQ121_RS07790 (SXYLSMQ121_1524) - 1648702..1649406 (-) 705 WP_042362817.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37717.69 Da        Isoelectric Point: 5.0032

>NTDB_id=123889 SXYLSMQ121_RS07765 WP_042362814.1 1644065..1645114(-) (recA) [Staphylococcus xylosus strain SMQ-121]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQRNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKSYLKENPAVKAEIDR
KLREKLGIFDGDVEEPEVNNTATLLDEEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=123889 SXYLSMQ121_RS07765 WP_042362814.1 1644065..1645114(-) (recA) [Staphylococcus xylosus strain SMQ-121]
TTGGATAACGATCGTCAAAAGGCTTTAGATACAGTAATTAAAAATATGGAGAAATCATTTGGTAAAGGCGCGGTAATGAA
ATTGGGTGATAACGAGGCACGCAAAGTTTCAAGTGTTTCAAGTGGTTCTGTAACATTAGATAATGCTTTAGGAGTAGGTG
GTTACCCTAAGGGTAGAATCGTAGAAATTTATGGTCCAGAAAGTTCTGGTAAAACGACTGTGGCTCTTCATGCCATTGCG
GAAGTTCAAAGAAATGGAGGCGTGGCAGCTTTTATTGACGCTGAACACGCATTAGACCCAGTTTACGCAGAAGCATTGGG
TGTTGATATTCAAAATTTATACCTATCTCAACCTGACCATGGGGAACAAGGTTTAGAGATTGCAGAAGCGTTTGTTAGAA
GTGGAGCTGTAGACATAGTTGTTGTTGATTCCGTTGCAGCATTAACACCTAAAGCAGAAATTGAAGGTGAAATGGGAGAT
ACACACGTTGGTTTACAAGCGCGTTTGATGTCACAAGCCCTAAGAAAACTTTCAGGTGCGATATCTAAATCAAATACGAC
TGCTGTATTCATTAACCAAATTCGTGAGAAAGTCGGTGTTATGTTTGGTAATCCTGAAGTTACACCAGGTGGCCGTGCAC
TGAAATTCTACAGTTCTGTTCGTTTAGAAGTACGCCGTGCAGAACAATTAAAACAAGGACAAGATATTGTCGGTAATAGA
ACTAAAATTAAAGTTGTTAAGAATAAAGTGGCACCACCATTTAGAGTTGCTGAAGTCGATATTATGTACGGTAAAGGTAT
CTCTAAAGAGGGAGAATTGATCGATTTAGGTGTTGAAAATGAAATCGTTGATAAGTCAGGTGCTTGGTATTCTTATAATG
GCGACAGAATGGGACAAGGTAAAGAAAACGTAAAATCTTACCTTAAAGAAAACCCTGCTGTCAAAGCAGAAATAGATAGA
AAACTAAGAGAAAAATTAGGAATATTTGATGGAGATGTTGAAGAGCCAGAAGTTAACAATACAGCAACACTTTTGGATGA
AGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5R9B6Z0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.767

93.41

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

71.341

93.983

0.67
  recA Streptococcus mutans UA159

63.143

100

0.633
  recA Streptococcus pyogenes NZ131

66.869

94.269

0.63
  recA Streptococcus pneumoniae D39

64.035

97.994

0.628
  recA Streptococcus pneumoniae Rx1

64.035

97.994

0.628
  recA Streptococcus pneumoniae R6

64.035

97.994

0.628
  recA Streptococcus pneumoniae TIGR4

64.035

97.994

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.559

94.842

0.622
  recA Streptococcus mitis SK321

65.165

95.415

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.653

94.269

0.619
  recA Neisseria gonorrhoeae MS11

65.653

94.269

0.619
  recA Neisseria gonorrhoeae MS11

65.653

94.269

0.619
  recA Streptococcus mitis NCTC 12261

64.565

95.415

0.616
  recA Acinetobacter baylyi ADP1

65.337

93.41

0.61
  recA Helicobacter pylori 26695

64.634

93.983

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

94.269

0.605
  recA Vibrio cholerae strain A1552

64.724

93.41

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.41

0.605
  recA Helicobacter pylori strain NCTC11637

64.329

93.983

0.605
  recA Acinetobacter baumannii D1279779

64.417

93.41

0.602
  recA Ralstonia pseudosolanacearum GMI1000

65.176

89.685

0.585
  recA Pseudomonas stutzeri DSM 10701

61.963

93.41

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.842

0.573
  recA Glaesserella parasuis strain SC1401

61.18

92.264

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.502

91.404

0.553

Multiple sequence alignment