Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RC08_RS05640 Genome accession   NZ_CP010510
Coordinates   1072478..1072972 (+) Length   164 a.a.
NCBI ID   WP_002933849.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC040     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1067478..1077972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC08_RS05625 (RC08_05620) - 1068863..1070041 (-) 1179 WP_002933852.1 metal-dependent hydrolase -
  RC08_RS05630 (RC08_05625) gpsA 1070051..1070947 (-) 897 WP_072225864.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  RC08_RS05635 (RC08_05630) gatB 1070944..1072362 (-) 1419 WP_002933850.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  RC08_RS05640 (RC08_05635) luxS 1072478..1072972 (+) 495 WP_002933849.1 S-ribosylhomocysteine lyase Regulator
  RC08_RS05645 (RC08_05640) - 1073282..1074274 (+) 993 WP_002933848.1 isopenicillin N synthase family oxygenase -
  RC08_RS05650 (RC08_05645) - 1074286..1075056 (+) 771 WP_059119320.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  RC08_RS05655 (RC08_05650) metE 1075068..1077332 (+) 2265 WP_002933844.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18242.27 Da        Isoelectric Point: 6.9497

>NTDB_id=123878 RC08_RS05640 WP_002933849.1 1072478..1072972(+) (luxS) [Campylobacter jejuni strain CJ677CC040]
MPLLDSFKVDHTKMLAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPNEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=123878 RC08_RS05640 WP_002933849.1 1072478..1072972(+) (luxS) [Campylobacter jejuni strain CJ677CC040]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCTAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTAATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
TATGAAAGATGTTTTAAGTGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGTGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment