Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   SXYLSMQ121_RS04725 Genome accession   NZ_CP008724
Coordinates   1032352..1033395 (+) Length   347 a.a.
NCBI ID   WP_042362410.1    Uniprot ID   A0A5R9B245
Organism   Staphylococcus xylosus strain SMQ-121     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1027352..1038395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYLSMQ121_RS04700 (SXYLSMQ121_0938) - 1028306..1029028 (+) 723 WP_042362406.1 glutamine amidotransferase -
  SXYLSMQ121_RS04705 (SXYLSMQ121_0939) - 1029231..1030217 (-) 987 WP_042362407.1 aromatic acid exporter family protein -
  SXYLSMQ121_RS04710 (SXYLSMQ121_0940) map 1030394..1031146 (+) 753 WP_039069016.1 type I methionyl aminopeptidase -
  SXYLSMQ121_RS04715 (SXYLSMQ121_0941) - 1031251..1031637 (+) 387 WP_042362408.1 hypothetical protein -
  SXYLSMQ121_RS04720 (SXYLSMQ121_0942) liaF 1031654..1032355 (+) 702 WP_042362409.1 cell wall-active antibiotics response protein LiaF -
  SXYLSMQ121_RS04725 (SXYLSMQ121_0943) vraS 1032352..1033395 (+) 1044 WP_042362410.1 sensor histidine kinase Regulator
  SXYLSMQ121_RS04730 (SXYLSMQ121_0944) vraR 1033385..1034014 (+) 630 WP_017723494.1 response regulator transcription factor Regulator
  SXYLSMQ121_RS04735 (SXYLSMQ121_0945) - 1034283..1035428 (-) 1146 WP_042362411.1 YihY/virulence factor BrkB family protein -
  SXYLSMQ121_RS04740 (SXYLSMQ121_0946) - 1035784..1036068 (-) 285 WP_042362412.1 hypothetical protein -
  SXYLSMQ121_RS04745 (SXYLSMQ121_0947) - 1036075..1036539 (-) 465 WP_042362413.1 low molecular weight protein-tyrosine-phosphatase -
  SXYLSMQ121_RS04750 (SXYLSMQ121_0948) - 1036674..1036877 (+) 204 WP_017723498.1 DUF1128 family protein -
  SXYLSMQ121_RS04755 (SXYLSMQ121_0949) - 1036895..1038133 (+) 1239 WP_042362414.1 aminopeptidase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 40037.55 Da        Isoelectric Point: 6.4215

>NTDB_id=123875 SXYLSMQ121_RS04725 WP_042362410.1 1032352..1033395(+) (vraS) [Staphylococcus xylosus strain SMQ-121]
MNHYIRAIGSMLILVYSTFFAIFFIDKVFVNVMYFQGMFYTQIFGIPVLLFLNLMVILLCIIVGSVLAYKINQQNHWLKD
QIERSIEGQTVGINDQNIELYNETIELYQTLVPLNQEVHKLRMKTQNLTNESYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETKLEAPLDQQIPVLEKMIQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVVDLQKKVPMKVIHDI
EEFKVPKGIEDHLFRITQEAISNTLRHSKGTKVTIELFNRDDYLLLRIQDNGKGFNVDDKVEQSYGLKNMRERALEIGAT
FHIVSLPDAGTRIEVKAPLNKEDSYAD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=123875 SXYLSMQ121_RS04725 WP_042362410.1 1032352..1033395(+) (vraS) [Staphylococcus xylosus strain SMQ-121]
ATGAATCACTACATTAGAGCAATAGGTTCGATGTTGATATTAGTTTATAGTACATTTTTTGCTATATTTTTTATTGATAA
AGTATTTGTTAACGTAATGTACTTTCAAGGTATGTTTTATACCCAAATATTTGGTATACCCGTCTTATTATTTTTAAATT
TAATGGTTATTTTGCTCTGTATTATTGTAGGTTCTGTATTAGCTTATAAAATAAACCAACAAAATCATTGGTTAAAAGAC
CAAATAGAAAGATCAATAGAAGGGCAAACTGTAGGTATAAATGATCAAAATATAGAATTGTATAACGAAACCATTGAGTT
ATATCAAACGTTAGTCCCTTTAAATCAAGAAGTACATAAATTAAGGATGAAAACGCAAAATTTAACTAATGAATCATATA
ATATTAATGATGTAAAAGTGAAAAAAATTATTGAAGATGAACGACAAAGGCTAGCACGTGAATTACATGATTCAGTGAGT
CAGCAGTTGTTCGCAGCTAGCATGATGTTATCAGCAATAAAAGAAACAAAATTAGAGGCACCACTAGATCAGCAAATTCC
GGTACTAGAGAAAATGATTCAAGATTCTCAGCTAGAAATGAGAGCTTTATTACTACATTTAAGACCTATAGGCTTGAAAG
ATAAATCACTTGGTGAAGGTATTAAAGACTTAGTTGTAGATCTACAGAAAAAAGTACCGATGAAAGTTATACATGATATA
GAAGAATTTAAAGTACCTAAAGGTATTGAAGATCATTTATTTAGAATCACACAAGAAGCTATATCGAATACATTAAGGCA
TTCAAAAGGAACAAAAGTAACTATAGAGTTATTTAATAGAGATGATTATTTATTATTGAGAATACAAGATAATGGTAAAG
GCTTTAATGTCGATGATAAAGTAGAACAAAGTTATGGCTTAAAAAATATGCGTGAGCGTGCACTTGAGATTGGTGCAACG
TTTCATATTGTGTCACTACCTGATGCAGGTACCAGAATTGAAGTTAAAGCCCCATTAAATAAGGAGGATTCATATGCCGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5R9B245

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

88.473

100

0.885


Multiple sequence alignment