Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SXYLSMQ121_RS04370 Genome accession   NZ_CP008724
Coordinates   961027..961743 (-) Length   238 a.a.
NCBI ID   WP_029378924.1    Uniprot ID   A0A418I5B6
Organism   Staphylococcus xylosus strain SMQ-121     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 956027..966743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYLSMQ121_RS04350 (SXYLSMQ121_0863) - 956692..956916 (+) 225 WP_042362355.1 sulfurtransferase TusA family protein -
  SXYLSMQ121_RS04355 (SXYLSMQ121_0864) - 957499..958461 (+) 963 WP_042362356.1 LacI family DNA-binding transcriptional regulator -
  SXYLSMQ121_RS04360 (SXYLSMQ121_0865) - 958545..960029 (+) 1485 WP_042362357.1 sucrose-6-phosphate hydrolase -
  SXYLSMQ121_RS04365 (SXYLSMQ121_0866) - 960026..960991 (+) 966 WP_042362358.1 carbohydrate kinase -
  SXYLSMQ121_RS04370 (SXYLSMQ121_0867) agrA 961027..961743 (-) 717 WP_029378924.1 LytTR family DNA-binding domain-containing protein Regulator
  SXYLSMQ121_RS04375 (SXYLSMQ121_0868) - 961756..963051 (-) 1296 WP_042362359.1 GHKL domain-containing protein -
  SXYLSMQ121_RS04380 (SXYLSMQ121_0870) - 963077..963226 (-) 150 WP_042362360.1 cyclic lactone autoinducer peptide -
  SXYLSMQ121_RS04385 (SXYLSMQ121_0871) - 963229..963798 (-) 570 WP_042362361.1 accessory gene regulator AgrB -
  SXYLSMQ121_RS04390 (SXYLSMQ121_0872) - 964564..965349 (-) 786 WP_042362362.1 carbon-nitrogen family hydrolase -
  SXYLSMQ121_RS04395 (SXYLSMQ121_0873) - 965713..966342 (-) 630 WP_042362363.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27939.77 Da        Isoelectric Point: 5.4095

>NTDB_id=123874 SXYLSMQ121_RS04370 WP_029378924.1 961027..961743(-) (agrA) [Staphylococcus xylosus strain SMQ-121]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=123874 SXYLSMQ121_RS04370 WP_029378924.1 961027..961743(-) (agrA) [Staphylococcus xylosus strain SMQ-121]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAACATATGGTTTCAATTATAAATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGAAGTTGCGACAGCTGATCCTTATGACATTTTAGAACGCTCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGATATTCAACTAGAAGCTGACATCAACGGAATCAAGCTTGCAAGTGAAATACGTAAACATGATCCG
GTTGGCAATATCATTTTTGTTACAAGTCATAGTGAACTGACATACTTAACATTTGTCTACAAGGTTGCAGCAATGGATTT
CATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCTTAGAAACATCTGAGTCACGACTAAAACTAC
TTTCAAAAGAAAGCAGCGTCGAAACAATAGAATTAAAACGTGGTAGCAATTCTATTTATGTACAATATGACGATGTGATG
TTCTTCGAATCATCTAGTAAATCCCATCGCTTAATCGCACATCTCGATAATCGTCAAATCGAATTTTATGGAAACCTTAA
AGAAATTGATCAGTTAGATAAACGCTTCTTTAGATGTCATAATAGTTTTGTAGTAAATAGACACAATATTGAGTCCATCG
ACTCTAAATCACGTGTAGTTTATTTTAAAAACAATGAACATTGTTATGCTTCTGTAAGAAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418I5B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.874

100

0.849

Multiple sequence alignment