Detailed information NTG0123785

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: ABUW_RS10940
• Genome accession: NZ_CP008706
• Coordinates: 2238004..2238705 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain AB5075-UW
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2233004..2243705

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABUW_RS10910 (ABUW_2244)	-	2233311..2233754 (-)	444	WP_001246675.1	SRPBCC family protein	-
ABUW_RS10915 (ABUW_2245)	tadA	2233824..2234327 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
ABUW_RS10920 (ABUW_2246)	-	2234334..2235458 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
ABUW_RS10925 (ABUW_2247)	ung	2235455..2236168 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
ABUW_RS10930 (ABUW_2248)	-	2236219..2236815 (-)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
ABUW_RS10935 (ABUW_2249)	gspK	2237045..2238004 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
ABUW_RS10940 (ABUW_2250)	xcpW	2238004..2238705 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
ABUW_RS10945 (ABUW_2251)	xcpV	2238705..2239085 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
ABUW_RS10950 (ABUW_2252)	-	2239075..2239629 (-)	555	WP_000841373.1	type II secretion system protein	-
ABUW_RS10955 (ABUW_2253)	-	2239639..2240247 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
ABUW_RS10960 (ABUW_2254)	-	2240285..2241058 (-)	774	WP_000497300.1	TatD family hydrolase	-
ABUW_RS10965 (ABUW_2255)	-	2241076..2241417 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
ABUW_RS10970 (ABUW_2256)	-	2241429..2242409 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
ABUW_RS10975 (ABUW_2257)	kdsB	2242421..2243182 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=123785 ABUW_RS10940 WP_000594579.1 2238004..2238705(-) (xcpW) [Acinetobacter baumannii strain AB5075-UW]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=123785 ABUW_RS10940 WP_000594579.1 2238004..2238705(-) (xcpW) [Acinetobacter baumannii strain AB5075-UW]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983