Detailed information NTG0123743

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BSUB_RS20210
• Genome accession: NZ_CP008698
• Coordinates: 3824039..3825184 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis str. AG1839
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3819039..3830184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSUB_RS20185 (BSUB_03977)	albF	3819055..3820335 (+)	1281	WP_003242974.1	pitrilysin family protein	-
BSUB_RS20190 (BSUB_03978)	albG	3820332..3821033 (+)	702	WP_003243391.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
BSUB_RS20195 (BSUB_03979)	ywhL	3821039..3822415 (-)	1377	WP_003244415.1	YncE family protein	-
BSUB_RS20200 (BSUB_03980)	ywhK	3822454..3823809 (-)	1356	WP_003227552.1	YncE family protein	-
BSUB_RS23330	-	3823806..3824036 (-)	231	WP_009968328.1	hypothetical protein	-
BSUB_RS20210 (BSUB_03981)	rapF	3824039..3825184 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
BSUB_RS20215 (BSUB_03982)	phrF	3825168..3825287 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
BSUB_RS20220 (BSUB_03983)	ywhH	3825386..3825859 (+)	474	WP_003227547.1	YbaK/EbsC family protein	-
BSUB_RS20225 (BSUB_03984)	speB	3825891..3826763 (-)	873	WP_003227545.1	agmatinase	-
BSUB_RS20230 (BSUB_03985)	speE	3826824..3827654 (-)	831	WP_003227543.1	spermidine synthase	-
BSUB_RS20235 (BSUB_03986)	pbpG	3827856..3829931 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=123743 BSUB_RS20210 WP_003227549.1 3824039..3825184(+) (rapF) [Bacillus subtilis subsp. subtilis str. AG1839]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=123743 BSUB_RS20210 WP_003227549.1 3824039..3825184(+) (rapF) [Bacillus subtilis subsp. subtilis str. AG1839]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572