Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   RC33_RS06935 Genome accession   NZ_CP010506
Coordinates   1332063..1333241 (-) Length   392 a.a.
NCBI ID   WP_002932300.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC527     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1327063..1338241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC33_RS06905 (RC33_06895) - 1327605..1327946 (+) 342 WP_002932295.1 hypothetical protein -
  RC33_RS06910 (RC33_06900) flgM 1328009..1328206 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  RC33_RS06915 (RC33_06905) - 1328248..1328682 (+) 435 WP_002779263.1 flagellar protein FlgN -
  RC33_RS06920 (RC33_06910) flgK 1328692..1330518 (+) 1827 WP_002932296.1 flagellar hook-associated protein FlgK -
  RC33_RS06925 (RC33_06915) - 1330535..1331299 (+) 765 WP_002932297.1 TIGR02757 family protein -
  RC33_RS06930 (RC33_06920) - 1331302..1332066 (+) 765 WP_002932298.1 TSUP family transporter -
  RC33_RS06935 (RC33_06925) ctsF 1332063..1333241 (-) 1179 WP_002932300.1 type II secretion system F family protein Machinery gene
  RC33_RS06940 (RC33_06930) ctsE 1333238..1334797 (-) 1560 WP_032598692.1 GspE/PulE family protein Machinery gene
  RC33_RS06945 (RC33_06935) ctsX 1334787..1335374 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RC33_RS06950 (RC33_06940) ctsP 1335378..1335984 (-) 607 Protein_1364 ATP-binding protein -
  RC33_RS06955 (RC33_06945) mshL 1335977..1337389 (-) 1413 Protein_1365 pilus (MSHA type) biogenesis protein MshL -
  RC33_RS06960 (RC33_06950) ctsR 1337367..1337678 (-) 312 WP_002932309.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45674.31 Da        Isoelectric Point: 9.0938

>NTDB_id=123705 RC33_RS06935 WP_002932300.1 1332063..1333241(-) (ctsF) [Campylobacter jejuni strain CJ677CC527]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=123705 RC33_RS06935 WP_002932300.1 1332063..1333241(-) (ctsF) [Campylobacter jejuni strain CJ677CC527]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCCAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCAGGTATAAATTTTTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

100

0.985

Multiple sequence alignment