Detailed information NTG0123632

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: EY04_RS26410
• Genome accession: NZ_CP008696
• Coordinates: 5921271..5922599 (+)
• Length: 442 a.a.
• NCBI ID: WP_038635209.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain PA23
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5916271..5927599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EY04_RS26390 (EY04_26955)	pgeF	5917770..5918495 (-)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-
EY04_RS26395 (EY04_26960)	rluD	5918492..5919454 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
EY04_RS26400 (EY04_26965)	-	5919607..5920629 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
EY04_RS26405 (EY04_26970)	-	5920764..5920997 (+)	234	WP_007924721.1	PP0621 family protein	-
EY04_RS26410 (EY04_26975)	pilR	5921271..5922599 (+)	1329	WP_038635209.1	sigma-54-dependent transcriptional regulator	Regulator
EY04_RS26415 (EY04_26980)	thiO	5922596..5923696 (-)	1101	WP_038635212.1	glycine oxidase ThiO	-
EY04_RS26420 (EY04_26985)	-	5923751..5924152 (-)	402	WP_009050937.1	type IV pilin protein	-
EY04_RS26425 (EY04_26990)	-	5924166..5927234 (-)	3069	WP_038635216.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48809.14 Da
• Isoelectric Point: 8.7216

>NTDB_id=123632 EY04_RS26410 WP_038635209.1 5921271..5922599(+) (pilR) [Pseudomonas chlororaphis strain PA23]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGPLPESTPANPATGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=123632 EY04_RS26410 WP_038635209.1 5921271..5922599(+) (pilR) [Pseudomonas chlororaphis strain PA23]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGAATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGTGCGATTCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAGTTGGCGCGACTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGCTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.441	100	0.667
pilR	Acinetobacter baumannii strain A118	43.791	100	0.455