Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   H733_RS07600 Genome accession   NZ_CP007805
Coordinates   1575807..1576490 (-) Length   227 a.a.
NCBI ID   WP_038440112.1    Uniprot ID   -
Organism   Haemophilus influenzae CGSHiCZ412602     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570807..1581490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H733_RS07585 (H733_1493) nrdR 1571597..1572046 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  H733_RS07590 (H733_1494) recC 1572101..1575481 (-) 3381 WP_038440110.1 exodeoxyribonuclease V subunit gamma -
  H733_RS07595 (H733_1495) comQ 1575527..1575814 (-) 288 WP_038440111.1 DUF5374 domain-containing protein Machinery gene
  H733_RS07600 (H733_1496) comP 1575807..1576490 (-) 684 WP_038440112.1 DUF2572 family protein Machinery gene
  H733_RS07605 (H733_1497) comO 1576490..1577206 (-) 717 WP_038440113.1 type II secretion system protein J Machinery gene
  H733_RS07610 (H733_1498) comN 1577206..1577718 (-) 513 WP_005651545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H733_RS07615 (H733_1499) suhB 1577918..1578721 (+) 804 WP_005664157.1 inositol-1-monophosphatase -
  H733_RS07620 (H733_1500) nrfE 1578831..1580738 (+) 1908 WP_038440263.1 heme lyase NrfEFG subunit NrfE -
  H733_RS07625 (H733_1501) - 1580738..1581268 (+) 531 WP_038440114.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25518.24 Da        Isoelectric Point: 9.3167

>NTDB_id=123502 H733_RS07600 WP_038440112.1 1575807..1576490(-) (comP) [Haemophilus influenzae CGSHiCZ412602]
MTTQKGIITLTILIFISGLLSVILLLDDSHLSFFRAQQNQRKHYVERTLQLQRITALKKQTACLDLPLNNDESVKQISIT
LDGATDSIQYFLWCERISLFKKSPKKGDNQGALKDFIHTEKLTDFRPHFSSPPRILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITNGNLTLDGVTLAYGKKTVVTLVRQYSQWQLAEKSWSDFNAQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=123502 H733_RS07600 WP_038440112.1 1575807..1576490(-) (comP) [Haemophilus influenzae CGSHiCZ412602]
ATGACAACACAAAAAGGCATTATTACGCTGACTATTCTGATTTTTATTTCAGGCTTATTAAGCGTAATCTTATTGTTAGA
TGATAGCCATTTAAGTTTTTTTCGGGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAATTACAAAGAA
TAACAGCCTTGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATGATGAAAGTGTAAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATAAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTCATTCACACAGAAAAACTTACAGATTTTCGACCGCACTTTTCTTCCCCACCCA
GAATTTTAAACGCGAATAAAACACCTAAACTTTATTGGTTTTCAGATTCACAAGCGGAAGTTGAAATTAATGGCACGGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCGCAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTAGTAACCTTAGTTCGACAATATAGCCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGCTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

89.868

100

0.899

Multiple sequence alignment