Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   RC26_RS03375 Genome accession   NZ_CP010501
Coordinates   608295..608678 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC520     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 603295..613678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC26_RS03355 (RC26_03350) - 603374..605308 (-) 1935 WP_002931984.1 ribonuclease R family protein -
  RC26_RS03360 (RC26_03355) ilvC 605427..606449 (+) 1023 WP_002931987.1 ketol-acid reductoisomerase -
  RC26_RS03365 (RC26_03360) - 606453..607535 (+) 1083 WP_002931999.1 divergent polysaccharide deacetylase family protein -
  RC26_RS03370 (RC26_03365) dprA 607525..608298 (+) 774 WP_002932002.1 DNA-processing protein DprA Machinery gene
  RC26_RS03375 (RC26_03370) dprB 608295..608678 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  RC26_RS03380 (RC26_03375) - 608707..609546 (+) 840 WP_072225841.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  RC26_RS03385 (RC26_03380) msrA 609722..610219 (-) 498 WP_002876697.1 peptide-methionine (S)-S-oxide reductase MsrA -
  RC26_RS03390 (RC26_03385) ppa 610260..610778 (-) 519 WP_002855031.1 inorganic diphosphatase -
  RC26_RS03395 (RC26_03390) adk 610788..611366 (-) 579 WP_002855137.1 adenylate kinase -
  RC26_RS03400 (RC26_03395) aspS 611363..613114 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=123449 RC26_RS03375 WP_002856861.1 608295..608678(+) (dprB) [Campylobacter jejuni strain CJ677CC520]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=123449 RC26_RS03375 WP_002856861.1 608295..608678(+) (dprB) [Campylobacter jejuni strain CJ677CC520]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment