Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   RC48_RS06120 Genome accession   NZ_CP010499
Coordinates   1165670..1166053 (-) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC542     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1160670..1171053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC48_RS06095 (RC48_06090) aspS 1161234..1162985 (+) 1752 WP_059110963.1 aspartate--tRNA ligase -
  RC48_RS06100 (RC48_06095) adk 1162982..1163560 (+) 579 WP_002855137.1 adenylate kinase -
  RC48_RS06105 (RC48_06100) ppa 1163570..1164088 (+) 519 WP_002855031.1 inorganic diphosphatase -
  RC48_RS06110 (RC48_06105) msrA 1164129..1164626 (+) 498 WP_002876697.1 peptide-methionine (S)-S-oxide reductase MsrA -
  RC48_RS06115 (RC48_06110) - 1164802..1165641 (-) 840 WP_079264093.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  RC48_RS06120 (RC48_06115) dprB 1165670..1166053 (-) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  RC48_RS06125 (RC48_06120) dprA 1166050..1166823 (-) 774 WP_002932002.1 DNA-processing protein DprA Machinery gene
  RC48_RS06130 (RC48_06125) - 1166813..1167895 (-) 1083 WP_002931999.1 divergent polysaccharide deacetylase family protein -
  RC48_RS06135 (RC48_06130) ilvC 1167899..1168921 (-) 1023 WP_002931987.1 ketol-acid reductoisomerase -
  RC48_RS06140 (RC48_06135) - 1169040..1170974 (+) 1935 WP_002931984.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=123375 RC48_RS06120 WP_002856861.1 1165670..1166053(-) (dprB) [Campylobacter jejuni strain CJ677CC542]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=123375 RC48_RS06120 WP_002856861.1 1165670..1166053(-) (dprB) [Campylobacter jejuni strain CJ677CC542]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment