Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC16712_RS06220 Genome accession   NZ_CP007778
Coordinates   1228758..1229672 (-) Length   304 a.a.
NCBI ID   WP_039642102.1    Uniprot ID   -
Organism   Campylobacter lari RM16712     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1225967..1245027 1228758..1229672 within 0


Gene organization within MGE regions


Location: 1225967..1245027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16712_RS06205 (UPTC16712_1234) - 1225967..1227352 (-) 1386 WP_039642098.1 replicative DNA helicase -
  UPTC16712_RS06210 (UPTC16712_1235) cysK 1227365..1228267 (-) 903 WP_039642100.1 cysteine synthase A -
  UPTC16712_RS06215 (UPTC16712_1236) - 1228363..1228665 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC16712_RS06220 (UPTC16712_1237) waaF 1228758..1229672 (-) 915 WP_039642102.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC16712_RS06225 (UPTC16712_1238) - 1229725..1230531 (+) 807 WP_039642104.1 glycosyltransferase family 2 protein -
  UPTC16712_RS06230 (UPTC16712_1239) - 1230514..1231593 (-) 1080 WP_158336658.1 hypothetical protein -
  UPTC16712_RS06235 (UPTC16712_1240) - 1231709..1232608 (+) 900 WP_039642108.1 glycosyltransferase family 2 protein -
  UPTC16712_RS06240 (UPTC16712_1241) - 1232580..1233641 (-) 1062 WP_373274538.1 beta-1,4-N-acetylgalactosaminyltransferase -
  UPTC16712_RS06245 (UPTC16712_1242) - 1233700..1234911 (+) 1212 WP_039642568.1 glycosyltransferase family 2 protein -
  UPTC16712_RS08600 (UPTC16712_1243) - 1234908..1235843 (+) 936 WP_039642112.1 glycosyltransferase family 2 protein -
  UPTC16712_RS06255 (UPTC16712_1244) - 1235846..1236793 (+) 948 WP_052241424.1 capsular polysaccharide synthesis protein -
  UPTC16712_RS06260 (UPTC16712_1245) - 1236786..1238003 (+) 1218 WP_039642117.1 glycosyltransferase family 2 protein -
  UPTC16712_RS06265 (UPTC16712_1246) - 1238004..1239551 (-) 1548 WP_039642119.1 glycosyltransferase -
  UPTC16712_RS06270 (UPTC16712_1247) - 1239560..1240432 (-) 873 WP_039642121.1 lipid A biosynthesis lauroyl acyltransferase -
  UPTC16712_RS06275 (UPTC16712_1248) waaC 1240429..1241448 (-) 1020 WP_039642124.1 lipopolysaccharide heptosyltransferase I -
  UPTC16712_RS06280 (UPTC16712_1249) - 1241514..1242293 (+) 780 WP_039642126.1 3'-5' exonuclease -
  UPTC16712_RS06285 (UPTC16712_1250) galE 1242353..1243339 (+) 987 WP_039642128.1 UDP-glucose 4-epimerase GalE -
  UPTC16712_RS06290 (UPTC16712_1251) - 1243333..1245027 (+) 1695 WP_039642569.1 flippase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34565.84 Da        Isoelectric Point: 10.3086

>NTDB_id=123330 UPTC16712_RS06220 WP_039642102.1 1228758..1229672(-) (waaF) [Campylobacter lari RM16712]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKCFENAKILVENKKQRYKQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALSFKVTSNALKLPIKAKSTQKILGINAGAHFGSAKRW
EASYFARVAKEFSLTHQILIFGVESEREICNEIERFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=123330 UPTC16712_RS06220 WP_039642102.1 1228758..1229672(-) (waaF) [Campylobacter lari RM16712]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAGTGTTTTGAAAATGCTAAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCAGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTTATAGAAAAAGCTTTAAGTTTTAAAGTCACTTCAAATGCTTTAA
AGCTTCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTGGCAAAAGAATTTAGCCTCACGCATCAAATTTTAATTTTTGGGGTAGAAAGTGAGAG
AGAAATTTGTAATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACTAAATTTAGTCAAACCTCACCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGTCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(140-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.287

100

0.674

Multiple sequence alignment