Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   UPTC16712_RS01945 Genome accession   NZ_CP007778
Coordinates   364358..365749 (+) Length   463 a.a.
NCBI ID   WP_039640917.1    Uniprot ID   -
Organism   Campylobacter lari RM16712     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359358..370749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16712_RS01930 (UPTC16712_0384) - 359743..360387 (+) 645 WP_039640911.1 HAD family hydrolase -
  UPTC16712_RS01935 (UPTC16712_0385) nifJ 360505..364059 (+) 3555 WP_039640913.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  UPTC16712_RS01940 (UPTC16712_0386) - 364126..364386 (+) 261 WP_126340701.1 hypothetical protein -
  UPTC16712_RS01945 (UPTC16712_0387) ctsD 364358..365749 (+) 1392 WP_039640917.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  UPTC16712_RS01950 (UPTC16712_0388) - 365730..366059 (+) 330 WP_052241327.1 transformation system, membrane protein CtsX -
  UPTC16712_RS01955 (UPTC16712_0389) - 366052..367566 (+) 1515 WP_052241329.1 transformation system, type II secretion system ATPase CtsE -
  UPTC16712_RS01960 (UPTC16712_0390) - 367563..368723 (+) 1161 WP_039640919.1 transformation system, type II secretion system membrane protein CtsF -
  UPTC16712_RS01965 (UPTC16712_0391) - 368720..369472 (-) 753 WP_039617669.1 TSUP family transporter -
  UPTC16712_RS01970 (UPTC16712_0392) - 369457..370206 (-) 750 WP_039640921.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52641.46 Da        Isoelectric Point: 7.9611

>NTDB_id=123321 UPTC16712_RS01945 WP_039640917.1 364358..365749(+) (ctsD) [Campylobacter lari RM16712]
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLVYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=123321 UPTC16712_RS01945 WP_039640917.1 364358..365749(+) (ctsD) [Campylobacter lari RM16712]
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATCATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGTTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAACCTATTATCAATACTAATGCAGGGATTATTACTTTAAATGC
TACTTTGTATGAGCTTACAAGGGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGTAAAACCACTGTGCTTTCTAACCCAAAACTCATGGCACTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACTATTAGTGAGACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTAAGTGCTTTATCTAAGATACCACTTTTTGGTGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.624

100

0.572

Multiple sequence alignment