Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   UPTC16712_RS01620 Genome accession   NZ_CP007778
Coordinates   298149..299327 (+) Length   392 a.a.
NCBI ID   WP_039640834.1    Uniprot ID   -
Organism   Campylobacter lari RM16712     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 293149..304327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16712_RS01605 (UPTC16712_0320) cysC 294275..294856 (+) 582 WP_039640828.1 adenylyl-sulfate kinase -
  UPTC16712_RS01610 (UPTC16712_0321) - 294856..296100 (+) 1245 WP_039640830.1 sulfotransferase -
  UPTC16712_RS01615 (UPTC16712_0322) - 296125..298152 (+) 2028 WP_039640832.1 capsular polysaccharide export protein -
  UPTC16712_RS01620 (UPTC16712_0323) kpsS 298149..299327 (+) 1179 WP_039640834.1 capsular polysaccharide export protein Regulator
  UPTC16712_RS08430 (UPTC16712_0324) - 299324..300832 (-) 1509 WP_039640836.1 hypothetical protein -
  UPTC16712_RS01630 (UPTC16712_0325) - 300995..302125 (+) 1131 WP_039640838.1 hypothetical protein -
  UPTC16712_RS01635 (UPTC16712_0326) - 302135..303508 (+) 1374 WP_039640840.1 cytochrome P450 -
  UPTC16712_RS01640 (UPTC16712_0327) - 303505..303858 (+) 354 WP_039640842.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46299.89 Da        Isoelectric Point: 10.1530

>NTDB_id=123320 UPTC16712_RS01620 WP_039640834.1 298149..299327(+) (kpsS) [Campylobacter lari RM16712]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPKAKVCKVNFNGGDFFFYPFKSINYTKSLAELEDFYKKLFEEKQIQV
ILMYNDCRKVHEIAISVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFRNM
AFASFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=123320 UPTC16712_RS01620 WP_039640834.1 298149..299327(+) (kpsS) [Campylobacter lari RM16712]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTGCTCCAAGGACCTGTGGGTGGATTTTTTCG
TAAAATTGCTACAAAAATTCCAAAAGCTAAGGTTTGTAAAGTAAATTTTAATGGCGGAGATTTTTTCTTTTACCCTTTTA
AAAGTATTAATTACACTAAAAGTTTAGCCGAGCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
ATCTTGATGTATAATGATTGTAGAAAAGTACACGAAATAGCCATTAGTGTTGCTAAACAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATATAAGACCAAATTTTATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCCACTTTGCCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGACAAAGATTTTAAATTTAAAACTTTCTCAAGTACTTTTAGAAATATG
GCCTTTGCTTCGTTTTTATACTGGCTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGCTT
AAAATTATTTGACTTTTTACCTTGGCTTTGTTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCTCTAAAACAAAAGTATTTTTTAGCTATTTTGCAAGTGCATAATGATACTCAACTATCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAGGTGATCATTTCTTTTGCTAATCATGCTAAAGCAAAGTCTTATCTAGTTTT
TAAGCACCATCCTATGGATCGTGGCTACAGAGACTATACTAAGCTTATAGAAGATTTGAGTTTAAAATACAATGTCGAGG
GTAGAATTTTATATGTACATGACTTACACTTACCTACGCTCTTAATCAATGCAAGAGGCACTATAGTGATAAATAGCACA
GTAGGACTTTCTGCTTTATATCACAATAGCCCTTTAAAGGTTATGGGTAAAGCTTTTTATGATATTGAAGGTTTGACTTA
TCAAAAAAGTTTGCATACTTTTTGGAAAGAATGCAGAGCGTATAAACCTGATGCAGTTTTACATGCCAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTTAATGGAAATTTTTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.278

100

0.628

Multiple sequence alignment