Detailed information NTG0123313

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: UPTC16701_RS06015
• Genome accession: NZ_CP007777
• Coordinates: 1188640..1189554 (-)
• Length: 304 a.a.
• NCBI ID: WP_039619005.1
• Uniprot ID: -
• Organism: Campylobacter lari RM16701
• Function: repress natural transformation (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1185848..1195613	1188640..1189554	within	0

Gene organization within MGE regions

Location: 1185848..1195613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UPTC16701_RS06000 (UPTC16701_1202)	-	1185848..1187233 (-)	1386	WP_039618998.1	replicative DNA helicase	-
UPTC16701_RS06005 (UPTC16701_1203)	cysK	1187246..1188148 (-)	903	WP_039619000.1	cysteine synthase A	-
UPTC16701_RS06010 (UPTC16701_1204)	-	1188245..1188547 (-)	303	WP_039619003.1	HU family DNA-binding protein	-
UPTC16701_RS06015 (UPTC16701_1205)	waaF	1188640..1189554 (-)	915	WP_039619005.1	lipopolysaccharide heptosyltransferase II	Regulator
UPTC16701_RS06020 (UPTC16701_1206)	-	1189607..1190413 (+)	807	WP_039619007.1	glycosyltransferase family 2 protein	-
UPTC16701_RS06025 (UPTC16701_1207)	rfbF	1190410..1191225 (+)	816	WP_039619009.1	glucose-1-phosphate cytidylyltransferase	-
UPTC16701_RS06030 (UPTC16701_1208)	rfbG	1191229..1192302 (+)	1074	WP_039619671.1	CDP-glucose 4,6-dehydratase	-
UPTC16701_RS06035 (UPTC16701_1209)	rfbC	1192299..1192862 (+)	564	WP_039619010.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-
UPTC16701_RS06040 (UPTC16701_1210)	-	1192859..1193773 (+)	915	WP_039619011.1	NAD(P)-dependent oxidoreductase	-
UPTC16701_RS06045 (UPTC16701_1211)	-	1193773..1194732 (+)	960	WP_039619013.1	NAD(P)-dependent oxidoreductase	-
UPTC16701_RS06050 (UPTC16701_1212)	-	1194732..1195613 (+)	882	WP_039619015.1	NAD dependent epimerase/dehydratase family protein	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 34601.68 Da
• Isoelectric Point: 10.2720

>NTDB_id=123313 UPTC16701_RS06015 WP_039619005.1 1188640..1189554(-) (waaF) [Campylobacter lari RM16701]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFTEKALNFKATSNVLKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPDVVINLAKTFF

Nucleotide

• Length: 915 bp

>NTDB_id=123313 UPTC16701_RS06015 WP_039619005.1 1188640..1189554(-) (waaF) [Campylobacter lari RM16701]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCAGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTAAGTACGGAACTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAACAAAGATATAAGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGTAAGATCATTTTAAATCTAATTAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTCTTAAAATACTTAAATTTCACAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATGTTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAGCATTTTCTTTTAAAAGAAGGCATAAAGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGCAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGTTCTACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
ATGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (109-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.331	100	0.664