Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   UPTC16701_RS01925 Genome accession   NZ_CP007777
Coordinates   356771..358162 (+) Length   463 a.a.
NCBI ID   WP_039617665.1    Uniprot ID   -
Organism   Campylobacter lari RM16701     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351771..363162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16701_RS01910 (UPTC16701_0382) - 352156..352800 (+) 645 WP_039617658.1 HAD family hydrolase -
  UPTC16701_RS01915 (UPTC16701_0383) nifJ 352918..356472 (+) 3555 WP_039617660.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  UPTC16701_RS01920 (UPTC16701_0384) - 356476..356799 (+) 324 WP_039617662.1 hypothetical protein -
  UPTC16701_RS01925 (UPTC16701_0385) ctsD 356771..358162 (+) 1392 WP_039617665.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  UPTC16701_RS01930 (UPTC16701_0386) - 358143..358472 (+) 330 WP_052243070.1 transformation system, membrane protein CtsX -
  UPTC16701_RS01935 (UPTC16701_0387) - 358465..359979 (+) 1515 WP_052243071.1 transformation system, type II secretion system ATPase CtsE -
  UPTC16701_RS01940 (UPTC16701_0388) - 359976..361136 (+) 1161 WP_039617667.1 transformation system, type II secretion system membrane protein CtsF -
  UPTC16701_RS01945 (UPTC16701_0389) - 361133..361885 (-) 753 WP_039617669.1 TSUP family transporter -
  UPTC16701_RS01950 (UPTC16701_0390) - 361870..362619 (-) 750 WP_039617671.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52627.43 Da        Isoelectric Point: 7.9611

>NTDB_id=123304 UPTC16701_RS01925 WP_039617665.1 356771..358162(+) (ctsD) [Campylobacter lari RM16701]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=123304 UPTC16701_RS01925 WP_039617665.1 356771..358162(+) (ctsD) [Campylobacter lari RM16701]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACCCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCAGTAGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTTATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGGATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATCTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAACCCAAAACTTATGGCGCTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAGACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCACAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAACCATAGACAAAATAAACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTCAGTGCCTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAACCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.838

100

0.575

Multiple sequence alignment