Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   UPTC16701_RS01600 Genome accession   NZ_CP007777
Coordinates   291784..292962 (+) Length   392 a.a.
NCBI ID   WP_039617558.1    Uniprot ID   -
Organism   Campylobacter lari RM16701     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 286784..297962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16701_RS01590 (UPTC16701_0319) - 287129..289603 (+) 2475 WP_039617554.1 SIR2 family protein -
  UPTC16701_RS01595 (UPTC16701_0320) - 289802..291787 (+) 1986 WP_039617556.1 capsular polysaccharide export protein -
  UPTC16701_RS01600 (UPTC16701_0321) kpsS 291784..292962 (+) 1179 WP_039617558.1 capsular polysaccharide export protein Regulator
  UPTC16701_RS01605 (UPTC16701_0322) - 293095..294225 (+) 1131 WP_039617559.1 hypothetical protein -
  UPTC16701_RS01610 (UPTC16701_0323) - 294235..295608 (+) 1374 WP_039617561.1 cytochrome P450 -
  UPTC16701_RS01615 (UPTC16701_0324) - 295605..295958 (+) 354 WP_039617563.1 membrane protein -
  UPTC16701_RS01620 (UPTC16701_0325) nusA 295955..297046 (-) 1092 WP_039617565.1 transcription termination factor NusA -
  UPTC16701_RS01625 (UPTC16701_0326) - 297170..297412 (+) 243 WP_039617566.1 HP0268 family nuclease -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46444.09 Da        Isoelectric Point: 10.1934

>NTDB_id=123303 UPTC16701_RS01600 WP_039617558.1 291784..292962(+) (kpsS) [Campylobacter lari RM16701]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPKAKVYKVNFNGGDFFFYPFKSINYSKSLAELEDFYKKLFEEKQIQV
ILMYNDCRKVHETAINVAKQMGIEIWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFKNM
AFASFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYIHDLHLPTLLINTRGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDVVLHAKFRNYVIYKTQINGNFFKNISLN

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=123303 UPTC16701_RS01600 WP_039617558.1 291784..292962(+) (kpsS) [Campylobacter lari RM16701]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTACTCCAAGGGCCTGTGGGAGGGTTTTTTCG
TAAAATTGCTACAAAAATTCCAAAAGCTAAGGTTTATAAAGTAAATTTTAATGGAGGGGATTTTTTCTTTTATCCTTTTA
AAAGTATTAATTATTCTAAAAGTTTAGCTGAGCTTGAAGACTTTTATAAAAAACTCTTTGAAGAAAAACAAATTCAAGTT
ATCTTGATGTATAATGATTGCAGAAAAGTGCATGAAACCGCCATTAATGTTGCTAAGCAAATGGGTATTGAAATATGGAT
TTTTGAAGAAGGTTATATAAGACCAAATTTTATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCCACTTTGCCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTCTCAAGTACTTTTAAAAATATG
GCCTTTGCTTCATTTTTATACTGGCTTTTTGCTTTTTTATTTTCTTGGTATTTTAACAATTCTTTACATCATAGAAGTTT
AAAATTATTTGACTTTTTACCTTGGCTTTGTTCAGTATATAGAAAAAATAAATACAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCCCTAAAACAAAAGTATTTTTTAGCTATTTTGCAAGTGCATAATGACACTCAACTATCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAGGTGATTATCTCTTTTGCCAATCATGCTAAAGCAAAGTCTTATCTAGTTTT
TAAACACCATCCTATGGATCGTGGTTATAGGGATTATACAAAACTTATAGAAGATTTGAGCTTAAAATACAATGTCGAGG
GTAGAATTTTATATATACATGATTTACACTTACCTACACTCTTGATCAATACAAGAGGCACTATAGTCATAAATAGCACG
GTAGGACTTTCTGCTTTATATCACAATAGTCCTTTAAAGGTTATGGGTAAAGCCTTTTATGATATAGAAGGTTTGACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGAGCATATAAACCTGATGTGGTTTTACATGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAATCAATGGAAATTTCTTCAAAAACATTAGTTTAAATTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.025

100

0.625

Multiple sequence alignment