Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC4110_RS06065 Genome accession   NZ_CP007776
Coordinates   1186557..1187477 (-) Length   306 a.a.
NCBI ID   WP_039628812.1    Uniprot ID   -
Organism   Campylobacter lari CCUG 22395     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181557..1192477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC4110_RS06045 (UPTC4110_1211) cysK 1182526..1183428 (-) 903 WP_039628807.1 cysteine synthase A -
  UPTC4110_RS06050 (UPTC4110_1212) - 1183525..1183827 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC4110_RS06055 (UPTC4110_1213) - 1183906..1185042 (-) 1137 WP_039628808.1 hypothetical protein -
  UPTC4110_RS06060 (UPTC4110_1214) - 1185051..1186556 (-) 1506 WP_039628810.1 membrane bound O-acyl transferase, MBOAT family -
  UPTC4110_RS06065 (UPTC4110_1215) waaF 1186557..1187477 (-) 921 WP_039628812.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC4110_RS06070 (UPTC4110_1216) - 1187491..1188603 (-) 1113 WP_039628814.1 hypothetical protein -
  UPTC4110_RS06075 (UPTC4110_1217) - 1188612..1190114 (-) 1503 WP_039628816.1 membrane bound O-acyl transferase, MBOAT family -
  UPTC4110_RS06080 (UPTC4110_1218) - 1190172..1190978 (+) 807 WP_039628819.1 glycosyltransferase family 2 protein -
  UPTC4110_RS06085 (UPTC4110_1219) rfbA 1191003..1191878 (+) 876 WP_039619036.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34825.86 Da        Isoelectric Point: 10.2148

>NTDB_id=123297 UPTC4110_RS06065 WP_039628812.1 1186557..1187477(-) (waaF) [Campylobacter lari CCUG 22395]
MNIFINLPTWLGDAVMASVAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIVLNLIKTKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHYLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLDLACMPCMQKVCPLKHHKCMKDLKPEVVINLARNFSGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=123297 UPTC4110_RS06065 WP_039628812.1 1186557..1187477(-) (waaF) [Campylobacter lari CCUG 22395]
ATGAATATTTTTATCAATCTTCCTACTTGGCTTGGCGATGCAGTAATGGCTAGTGTGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAGATTTTACAAGCTAGAAAAAATCTTGGTAAATTTGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGTAAGATTGTTTTAAATCTAATCAAAACAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAGCATTATCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGTATTT
ATACTTTATGTAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCTCA
TCTTGATCTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAGAAATTTTTCAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.176

100

0.667

Multiple sequence alignment