Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   UPTC4110_RS01930 Genome accession   NZ_CP007776
Coordinates   358976..360367 (+) Length   463 a.a.
NCBI ID   WP_039617665.1    Uniprot ID   -
Organism   Campylobacter lari CCUG 22395     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353976..365367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC4110_RS01915 (UPTC4110_0382) - 354361..355005 (+) 645 WP_039628023.1 HAD family hydrolase -
  UPTC4110_RS01920 (UPTC4110_0383) nifJ 355123..358677 (+) 3555 WP_039628025.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  UPTC4110_RS01925 (UPTC4110_0384) - 358681..359004 (+) 324 WP_039628027.1 hypothetical protein -
  UPTC4110_RS01930 (UPTC4110_0385) ctsD 358976..360367 (+) 1392 WP_039617665.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  UPTC4110_RS01935 (UPTC4110_0386) - 360348..360677 (+) 330 WP_052241327.1 transformation system, membrane protein CtsX -
  UPTC4110_RS01940 (UPTC4110_0387) - 360670..362184 (+) 1515 WP_052243362.1 transformation system, type II secretion system ATPase CtsE -
  UPTC4110_RS01945 (UPTC4110_0388) - 362181..363341 (+) 1161 WP_039628029.1 transformation system, type II secretion system membrane protein CtsF -
  UPTC4110_RS01950 (UPTC4110_0389) - 363338..364090 (-) 753 WP_039617669.1 TSUP family transporter -
  UPTC4110_RS01955 (UPTC4110_0390) - 364075..364824 (-) 750 WP_039628031.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52627.43 Da        Isoelectric Point: 7.9611

>NTDB_id=123288 UPTC4110_RS01930 WP_039617665.1 358976..360367(+) (ctsD) [Campylobacter lari CCUG 22395]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=123288 UPTC4110_RS01930 WP_039617665.1 358976..360367(+) (ctsD) [Campylobacter lari CCUG 22395]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCCTCACAGTGCCATCAGCGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATCGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCCAGAGAAAAGTTAAATCATACCCAAAATTATCTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCGGTGGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTTATTAGCACGGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTACTAGATGAAAATACAACTAAGCCTATTATTAATACTAATGCAGGGATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATCTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAACCCAAAACTTATGGCACTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAGGGTACTGAAAATGGTACGACCATTAGTGAGACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCTGAAATTTCAGATGATCATAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCGCCAGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTAAGTGCTTTATCTAAGATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.838

100

0.575

Multiple sequence alignment