Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | UPTC3659_RS07310 | Genome accession | NZ_CP007775 |
| Coordinates | 1463400..1464314 (-) | Length | 304 a.a. |
| NCBI ID | WP_039626855.1 | Uniprot ID | A0A0A8HZR2 |
| Organism | Campylobacter lari NCTC 11845 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1457579..1507628 | 1463400..1464314 | within | 0 |
Gene organization within MGE regions
Location: 1457579..1507628
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UPTC3659_RS07280 (UPTC3659_1449) | - | 1457579..1458736 (+) | 1158 | WP_039626845.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| UPTC3659_RS07285 (UPTC3659_1450) | mgtE | 1458738..1460081 (+) | 1344 | WP_039626847.1 | magnesium transporter | - |
| UPTC3659_RS07290 (UPTC3659_1451) | tpx | 1460094..1460612 (+) | 519 | WP_039626849.1 | thiol peroxidase | - |
| UPTC3659_RS07295 (UPTC3659_1452) | - | 1460609..1461994 (-) | 1386 | WP_039626851.1 | replicative DNA helicase | - |
| UPTC3659_RS07300 (UPTC3659_1453) | cysK | 1462007..1462909 (-) | 903 | WP_039626853.1 | cysteine synthase A | - |
| UPTC3659_RS07305 (UPTC3659_1454) | - | 1463006..1463308 (-) | 303 | WP_039619003.1 | HU family DNA-binding protein | - |
| UPTC3659_RS07310 (UPTC3659_1455) | waaF | 1463400..1464314 (-) | 915 | WP_039626855.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| UPTC3659_RS07315 (UPTC3659_1456) | - | 1464367..1465182 (+) | 816 | WP_039626857.1 | glycosyltransferase family 2 protein | - |
| UPTC3659_RS07320 (UPTC3659_1457) | - | 1465170..1465907 (+) | 738 | WP_039626859.1 | glycosyltransferase family 25 protein | - |
| UPTC3659_RS07325 (UPTC3659_1458) | - | 1465937..1468306 (+) | 2370 | WP_052243307.1 | phosphoethanolamine transferase | - |
| UPTC3659_RS07330 (UPTC3659_1459) | - | 1468330..1469193 (+) | 864 | WP_039626861.1 | alpha-1,2-fucosyltransferase | - |
| UPTC3659_RS07335 (UPTC3659_1460) | - | 1469205..1470125 (+) | 921 | WP_039626862.1 | glycosyltransferase family 2 protein | - |
| UPTC3659_RS07340 (UPTC3659_1461) | - | 1470120..1471184 (-) | 1065 | WP_039626864.1 | glycosyltransferase family 4 protein | - |
| UPTC3659_RS07345 (UPTC3659_1462) | - | 1471181..1472350 (-) | 1170 | WP_039626866.1 | glycosyltransferase family 2 protein | - |
| UPTC3659_RS07350 (UPTC3659_1463) | - | 1472410..1473405 (+) | 996 | WP_039626867.1 | capsular polysaccharide synthesis protein | - |
| UPTC3659_RS07355 (UPTC3659_1464) | - | 1473389..1474562 (-) | 1174 | Protein_1447 | glycosyltransferase family 2 protein | - |
| UPTC3659_RS07360 (UPTC3659_1465) | - | 1474566..1476113 (-) | 1548 | WP_039626872.1 | glycosyltransferase | - |
| UPTC3659_RS07365 (UPTC3659_1466) | - | 1476122..1476994 (-) | 873 | WP_039626874.1 | lipid A biosynthesis lauroyl acyltransferase | - |
| UPTC3659_RS07370 (UPTC3659_1467) | waaC | 1476991..1478010 (-) | 1020 | WP_039626876.1 | lipopolysaccharide heptosyltransferase I | - |
| UPTC3659_RS07375 (UPTC3659_1468) | - | 1478077..1478856 (+) | 780 | WP_039626878.1 | 3'-5' exonuclease | - |
| UPTC3659_RS07380 (UPTC3659_1469) | galE | 1478915..1479901 (+) | 987 | WP_039626879.1 | UDP-glucose 4-epimerase GalE | - |
| UPTC3659_RS07385 (UPTC3659_1470) | - | 1479895..1481589 (+) | 1695 | WP_039627531.1 | flippase | - |
| UPTC3659_RS07390 (UPTC3659_1471) | - | 1481586..1482650 (+) | 1065 | WP_039626881.1 | GalNAc alpha1-4 transferase | - |
| UPTC3659_RS07395 (UPTC3659_1472) | - | 1482652..1483752 (+) | 1101 | WP_039626883.1 | GlcNAc alpha1-4 transferase | - |
| UPTC3659_RS07400 (UPTC3659_1473) | - | 1483754..1485892 (+) | 2139 | WP_039626886.1 | oligosaccharide transferase | - |
| UPTC3659_RS07405 (UPTC3659_1474) | pglA | 1485889..1487016 (+) | 1128 | WP_039626888.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| UPTC3659_RS07410 (UPTC3659_1475) | pglC | 1487009..1487611 (+) | 603 | WP_039626890.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| UPTC3659_RS07415 (UPTC3659_1476) | pglD | 1487598..1488194 (+) | 597 | WP_039626891.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| UPTC3659_RS07420 (UPTC3659_1477) | pglE | 1488191..1489351 (+) | 1161 | WP_039626893.1 | UDP-N-acetylbacillosamine transaminase | - |
| UPTC3659_RS07425 (UPTC3659_1478) | pglF | 1489353..1491116 (+) | 1764 | WP_039626895.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| UPTC3659_RS07430 (UPTC3659_1479) | - | 1491229..1491606 (+) | 378 | WP_039619063.1 | chemotaxis response regulator CheY | - |
| UPTC3659_RS07435 (UPTC3659_1480) | - | 1491619..1492455 (+) | 837 | WP_039626897.1 | 50S ribosomal protein L11 methyltransferase | - |
| UPTC3659_RS07440 (UPTC3659_1481) | ftsH | 1492455..1494377 (+) | 1923 | WP_039619068.1 | ATP-dependent zinc metalloprotease FtsH | - |
| UPTC3659_RS07445 (UPTC3659_1482) | - | 1494377..1494994 (+) | 618 | WP_039626899.1 | phosphatidylserine decarboxylase-related protein | - |
| UPTC3659_RS07450 (UPTC3659_1483) | pssA | 1494991..1495701 (+) | 711 | WP_039626901.1 | CDP-diacylglycerol--serine O-phosphatidyltransferase | - |
| UPTC3659_RS07455 (UPTC3659_1484) | - | 1495765..1496319 (+) | 555 | WP_039626903.1 | membrane protein | - |
| UPTC3659_RS07465 (UPTC3659_1486) | - | 1496557..1498026 (+) | 1470 | WP_039626905.1 | DNA methylase | - |
| UPTC3659_RS07470 (UPTC3659_1487) | - | 1498019..1498213 (+) | 195 | WP_039626907.1 | hypothetical protein | - |
| UPTC3659_RS07475 (UPTC3659_1488) | ciaB | 1498232..1500067 (-) | 1836 | WP_039626909.1 | invasion protein CiaB | - |
| UPTC3659_RS07480 (UPTC3659_1489) | - | 1500132..1500536 (+) | 405 | WP_039626910.1 | acyl-CoA thioesterase | - |
| UPTC3659_RS07485 (UPTC3659_1490) | - | 1500601..1501530 (+) | 930 | WP_039626912.1 | ribose-phosphate pyrophosphokinase | - |
| UPTC3659_RS07490 (UPTC3659_1491) | - | 1501754..1502737 (+) | 984 | WP_039626914.1 | DUF3800 domain-containing protein | - |
| UPTC3659_RS07495 (UPTC3659_1494) | - | 1503223..1503633 (-) | 411 | WP_039619086.1 | hypothetical protein | - |
| UPTC3659_RS07500 (UPTC3659_1495) | - | 1503754..1505472 (+) | 1719 | WP_039626916.1 | DUF262 domain-containing protein | - |
| UPTC3659_RS07505 (UPTC3659_1496) | ruvB | 1505585..1506595 (+) | 1011 | WP_039619088.1 | Holliday junction branch migration DNA helicase RuvB | - |
| UPTC3659_RS07510 (UPTC3659_1497) | - | 1506585..1507628 (+) | 1044 | WP_039626918.1 | AI-2E family transporter | - |
Sequence
Protein
Download Length: 304 a.a. Molecular weight: 34734.92 Da Isoelectric Point: 10.3643
>NTDB_id=123280 UPTC3659_RS07310 WP_039626855.1 1463400..1464314(-) (waaF) [Campylobacter lari NCTC 11845]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQTKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILKARKNLGKFDLAFS
FRSAFSSKIVLNLIKTKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIERFLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLVCMPCMQKVCPLKHHKCMKDLKPDVVINLAKTFF
MNIFINLPTWLGDAVMASAAIYAIKEKYPQTKFTFYGSFVSTELFKRFENAQILVENKKQRYKQILKARKNLGKFDLAFS
FRSAFSSKIVLNLIKTKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIERFLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLVCMPCMQKVCPLKHHKCMKDLKPDVVINLAKTFF
Nucleotide
Download Length: 915 bp
>NTDB_id=123280 UPTC3659_RS07310 WP_039626855.1 1463400..1464314(-) (waaF) [Campylobacter lari NCTC 11845]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
GTATCCCCAAACTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGTAAGATTGTTTTAAATCTAATCAAAACAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTAATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGTTTAT
GGAGTAAAAACGGTGGCCGTTTTTGGCTCTACTAAATTTAGTCAAACCTCACCTTGGCAAGAAAATGCTAAAATAGCACA
CTTAAATTTAGTTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCATAAATGTATGAAAGACTTAAAGCCTG
ATGTGGTAATAAATTTAGCAAAAACATTTTTTTAA
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
GTATCCCCAAACTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGTAAGATTGTTTTAAATCTAATCAAAACAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTTTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACGCATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTAATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGTTTAT
GGAGTAAAAACGGTGGCCGTTTTTGGCTCTACTAAATTTAGTCAAACCTCACCTTGGCAAGAAAATGCTAAAATAGCACA
CTTAAATTTAGTTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCATAAATGTATGAAAGACTTAAAGCCTG
ATGTGGTAATAAATTTAGCAAAAACATTTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
64.013 |
100 |
0.661 |