Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   UPTC3659_RS04290 Genome accession   NZ_CP007775
Coordinates   829678..830646 (-) Length   322 a.a.
NCBI ID   WP_236681668.1    Uniprot ID   -
Organism   Campylobacter lari NCTC 11845     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 824678..835646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC3659_RS04270 (UPTC3659_0853) - 824917..826959 (-) 2043 WP_321968542.1 TonB-dependent receptor domain-containing protein -
  UPTC3659_RS04275 (UPTC3659_0854) - 826983..827912 (-) 930 WP_039626029.1 siderophore ABC transporter substrate-binding protein -
  UPTC3659_RS04280 (UPTC3659_0855) - 827992..828753 (-) 762 WP_039626032.1 ABC transporter ATP-binding protein -
  UPTC3659_RS04285 (UPTC3659_0856) - 828750..829685 (-) 936 WP_039626034.1 iron chelate uptake ABC transporter family permease subunit -
  UPTC3659_RS04290 (UPTC3659_0857) ceuB 829678..830646 (-) 969 WP_236681668.1 ABC transporter permease Machinery gene
  UPTC3659_RS04295 (UPTC3659_0858) flgA 831627..832295 (+) 669 WP_069106955.1 flagellar basal body P-ring formation chaperone FlgA -
  UPTC3659_RS04300 (UPTC3659_0859) - 832292..832870 (+) 579 WP_039626038.1 UbiX family flavin prenyltransferase -
  UPTC3659_RS04305 (UPTC3659_0860) coaD 832870..833349 (+) 480 WP_080750157.1 pantetheine-phosphate adenylyltransferase -
  UPTC3659_RS04310 (UPTC3659_0861) tmk 833340..833924 (+) 585 WP_039626042.1 dTMP kinase -
  UPTC3659_RS04315 (UPTC3659_0862) hisS 833917..835143 (+) 1227 WP_039626044.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35855.69 Da        Isoelectric Point: 9.2495

>NTDB_id=123272 UPTC3659_RS04290 WP_236681668.1 829678..830646(-) (ceuB) [Campylobacter lari NCTC 11845]
MMIKYLFGISFLIPTLIFLSLISLFVGVKDISIFNILSLTQEEKEILTIVRLPRLISIIITGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILICMLFFSGFNFIYQIFIAFIFTLIGSVIFIQILQKIKLKEIVFVPLIGLMFGGIINSITTFFA
YENNMIQNIQGWLQGNFSSIMIGNYEILFISIPIFIIAYFFANKITIVGMGKDVSLNLGVSYNTILYIGLIIISIVVSIV
VLTIGVIPFLGLVIPNIVSIYKGDNLKAVLFYTAILGAVFLLVCDILSRTIIYPFEIPINLTVGIIGGILFVWILLRKKT
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=123272 UPTC3659_RS04290 WP_236681668.1 829678..830646(-) (ceuB) [Campylobacter lari NCTC 11845]
ATTATGATTAAATATTTATTTGGAATTAGTTTTTTAATACCTACATTAATATTTCTATCCTTGATTAGTCTTTTTGTAGG
CGTTAAAGATATTTCTATATTTAATATTCTATCTTTAACTCAAGAAGAAAAAGAAATTTTAACAATTGTTAGACTACCAA
GATTAATTTCCATTATCATTACTGGAATGAGCTTGAGTATATGCGGTTTGATTATGCAGCAACTTACTCAAAATAAATTT
GTATCTCCTACAACCGCAGGGACTATGGATTGTGCTAAATTTGGAATTTTAATTTGTATGTTATTTTTTAGTGGATTTAA
TTTTATTTATCAAATTTTTATAGCTTTTATTTTTACTCTTATTGGTAGTGTTATTTTTATCCAAATACTTCAAAAAATAA
AACTAAAAGAAATTGTTTTTGTTCCTTTGATTGGATTAATGTTTGGAGGTATTATTAACTCTATTACGACTTTTTTTGCT
TATGAAAACAATATGATACAAAATATTCAAGGCTGGCTACAAGGTAATTTTTCATCTATCATGATAGGAAATTATGAAAT
ATTATTTATTAGTATTCCTATTTTTATCATTGCATATTTTTTTGCTAATAAAATCACCATTGTTGGCATGGGTAAAGATG
TTTCCTTAAATTTGGGCGTCTCATACAATACTATTTTATATATAGGGTTAATTATAATTTCCATTGTGGTTTCTATTGTG
GTTTTAACAATAGGGGTAATACCTTTTTTAGGTCTTGTTATACCAAACATAGTTTCAATATATAAAGGTGATAATTTAAA
AGCTGTTCTTTTTTATACCGCAATACTTGGAGCCGTGTTTTTATTAGTATGCGATATTTTATCAAGGACTATTATTTATC
CATTTGAAATTCCTATAAATTTAACCGTTGGCATTATTGGAGGTATTTTATTTGTTTGGATTTTACTAAGAAAGAAAACA
AATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(16-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

61.801

100

0.618

Multiple sequence alignment