Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   UPTC3659_RS03280 Genome accession   NZ_CP007775
Coordinates   629307..629981 (-) Length   224 a.a.
NCBI ID   WP_039625736.1    Uniprot ID   -
Organism   Campylobacter lari NCTC 11845     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 624307..634981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC3659_RS03240 (UPTC3659_0646) - 624835..625695 (-) 861 WP_039625726.1 lambda-exonuclease family protein -
  UPTC3659_RS03245 (UPTC3659_0647) - 625685..625936 (-) 252 WP_039625727.1 hypothetical protein -
  UPTC3659_RS03250 (UPTC3659_0648) - 625936..626139 (-) 204 WP_039625728.1 hypothetical protein -
  UPTC3659_RS03255 (UPTC3659_0649) - 626728..627003 (-) 276 WP_039625730.1 hypothetical protein -
  UPTC3659_RS09510 - 627055..627204 (+) 150 WP_167348867.1 hypothetical protein -
  UPTC3659_RS03260 (UPTC3659_0650) - 627185..627376 (-) 192 WP_039625732.1 hypothetical protein -
  UPTC3659_RS03265 (UPTC3659_0651) - 627616..628311 (+) 696 WP_408649149.1 sel1 repeat family protein -
  UPTC3659_RS03270 (UPTC3659_0652) - 628327..628614 (-) 288 WP_039625734.1 hypothetical protein -
  UPTC3659_RS03275 (UPTC3659_0653) - 628605..629120 (-) 516 WP_039625735.1 Panacea domain-containing protein -
  UPTC3659_RS03280 (UPTC3659_0654) CJE1441 629307..629981 (-) 675 WP_039625736.1 DNA/RNA endonuclease G Regulator
  UPTC3659_RS03285 (UPTC3659_0655) - 630023..630295 (-) 273 WP_039625737.1 hypothetical protein -
  UPTC3659_RS03290 (UPTC3659_0656) - 630276..631178 (-) 903 WP_039625739.1 hypothetical protein -
  UPTC3659_RS03295 (UPTC3659_0657) - 631254..631976 (-) 723 WP_039625741.1 S24 family peptidase -
  UPTC3659_RS03300 (UPTC3659_0658) - 632090..632311 (+) 222 WP_039625743.1 hypothetical protein -
  UPTC3659_RS09460 (UPTC3659_0659) - 632308..632478 (+) 171 WP_158336784.1 hypothetical protein -
  UPTC3659_RS09465 (UPTC3659_0660) - 632475..632642 (-) 168 WP_158336786.1 hypothetical protein -
  UPTC3659_RS03305 (UPTC3659_0661) - 632852..633838 (+) 987 WP_039625745.1 hypothetical protein -
  UPTC3659_RS03310 (UPTC3659_0662) - 633846..634511 (+) 666 WP_052243262.1 hypothetical protein -
  UPTC3659_RS03315 (UPTC3659_0663) - 634508..634894 (+) 387 WP_039625747.1 endodeoxyribonuclease RusA-like protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26422.11 Da        Isoelectric Point: 9.8162

>NTDB_id=123271 UPTC3659_RS03280 WP_039625736.1 629307..629981(-) (CJE1441) [Campylobacter lari NCTC 11845]
MMKIILLPLLATLTLANYTQYKPSEDFAKYFTTQNCSQILDKFYYIDCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSNYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQIALKLGEIEVL
NLVNYDSNPQRIKNQIAIPNSYIKIIKGNNFKECYKVPNYEVDNLSIKRYKFNCDVLTSNNHQS

Nucleotide


Download         Length: 675 bp        

>NTDB_id=123271 UPTC3659_RS03280 WP_039625736.1 629307..629981(-) (CJE1441) [Campylobacter lari NCTC 11845]
ATAATGAAAATCATACTTTTGCCACTATTAGCAACTCTAACCTTAGCTAATTACACACAATATAAACCGAGTGAAGATTT
TGCAAAGTATTTTACTACACAAAATTGCTCTCAAATTTTAGATAAATTTTATTATATTGATTGCTATGATTATAACTACA
AAGGTACTAAAGCAGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCGCGCTTTGAA
GATGATACAAATATCCCTAAAAAATATCGTACCACTTGGAGTGATTATAAAAATAGTAATTATGATAGAGGACATACCCT
TTCTAATGCCTCTATGAGAAAAACCACTCAAGCTCAAAGAAGTACATTCTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGGCAAATAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTATATCAAGATTATAAA
AGGTAATAATTTTAAAGAATGCTATAAAGTCCCAAATTATGAAGTCGATAATTTAAGTATAAAAAGATATAAGTTTAATT
GTGATGTTTTAACTAGCAATAATCATCAGTCTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

84.653

90.179

0.763
  CJE0566 Campylobacter jejuni RM1221

84.158

90.179

0.759

Multiple sequence alignment