Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   UPTC3659_RS02045 Genome accession   NZ_CP007775
Coordinates   389942..391333 (+) Length   463 a.a.
NCBI ID   WP_039625450.1    Uniprot ID   A0A0A8HV17
Organism   Campylobacter lari NCTC 11845     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384942..396333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC3659_RS02030 (UPTC3659_0403) - 385327..385971 (+) 645 WP_039617658.1 HAD family hydrolase -
  UPTC3659_RS02035 (UPTC3659_0404) nifJ 386089..389643 (+) 3555 WP_039625449.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  UPTC3659_RS02040 (UPTC3659_0405) - 389665..389970 (+) 306 WP_052243244.1 hypothetical protein -
  UPTC3659_RS02045 (UPTC3659_0406) ctsD 389942..391333 (+) 1392 WP_039625450.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  UPTC3659_RS02050 (UPTC3659_0407) - 391314..391643 (+) 330 WP_052243245.1 transformation system, membrane protein CtsX -
  UPTC3659_RS02055 (UPTC3659_0408) - 391636..393150 (+) 1515 WP_052243246.1 transformation system, type II secretion system ATPase CtsE -
  UPTC3659_RS02060 (UPTC3659_0409) - 393147..394307 (+) 1161 WP_039625451.1 transformation system, type II secretion system membrane protein CtsF -
  UPTC3659_RS02065 (UPTC3659_0410) - 394304..395056 (-) 753 WP_039625452.1 TSUP family transporter -
  UPTC3659_RS02070 (UPTC3659_0411) - 395041..395790 (-) 750 WP_039625453.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52614.39 Da        Isoelectric Point: 7.9617

>NTDB_id=123269 UPTC3659_RS02045 WP_039625450.1 389942..391333(+) (ctsD) [Campylobacter lari NCTC 11845]
MKKIIFLFISVLTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDSDFIINKGGVRNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNRPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=123269 UPTC3659_RS02045 WP_039625450.1 389942..391333(+) (ctsD) [Campylobacter lari NCTC 11845]
ATGAAAAAAATAATATTTTTATTTATTAGTGTTTTAACTTTTACAAATGTTTTTGCTTCACAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAATATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTGCATTATATAAGTTCTATTAGAGAAGGGCAAAGTATCACCAAAGCTTCGGTTGATTCAAGACCTAAAC
AAGGTGATTATGATAGTACTAAAGAAGCAGATAATCTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAGCCTATTATCAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTATATGAGCTTACAAGAGTTGAAAAATATCTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCCGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTCAATGGA
GATGATAGTGATTTTATAATCAATAAAGGTGGTGTTAGAAATATCAATCTTAAAGCCAATGTTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTGCTTTCTAACCCAAAACTCATGGCGCTTAATAATCAACAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCCAAGGGCACTGAAAATGGTACAACCATTAGTGAAACT
TATAATAATTACTCTATTTTTGTAGGAATTTTACTAAATATTTTACCTGAAATTTCAGATGATCATAAAATCATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAGACCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAAACTTTAATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGTAATCATAACGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGAGCTTTATTTCAAGGAAAGCAAAATTT
AGAAGATATTAGCGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGCTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8HV17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.41

100

0.57

Multiple sequence alignment