Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   CVOL_RS02930 Genome accession   NZ_CP007774
Coordinates   554261..556054 (-) Length   597 a.a.
NCBI ID   WP_039665369.1    Uniprot ID   A0AAE6CZY4
Organism   Campylobacter volucris LMG 24379     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 549261..561054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVOL_RS02905 (CVOL_0578) dnaJ 549532..550656 (-) 1125 WP_039665364.1 molecular chaperone DnaJ -
  CVOL_RS02910 (CVOL_0579) - 550774..551445 (+) 672 WP_039665365.1 response regulator transcription factor -
  CVOL_RS02915 (CVOL_0580) - 551442..552677 (+) 1236 WP_039665366.1 ArsS family sensor histidine kinase -
  CVOL_RS02920 (CVOL_0581) recR 552674..553246 (+) 573 WP_039665367.1 recombination mediator RecR -
  CVOL_RS02925 (CVOL_0582) - 553233..554264 (-) 1032 WP_039665368.1 hypothetical protein -
  CVOL_RS02930 (CVOL_0583) uvrC 554261..556054 (-) 1794 WP_039665369.1 excinuclease ABC subunit UvrC Machinery gene
  CVOL_RS02935 (CVOL_0584) - 556041..556502 (-) 462 WP_039665370.1 hypothetical protein -
  CVOL_RS02945 (CVOL_0585) nhaD 556637..557992 (+) 1356 WP_039665372.1 sodium:proton antiporter NhaD -
  CVOL_RS02950 (CVOL_0586) guaA 558002..559537 (+) 1536 WP_039665373.1 glutamine-hydrolyzing GMP synthase -
  CVOL_RS02955 (CVOL_0587) - 559538..560089 (-) 552 WP_039665374.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 69511.78 Da        Isoelectric Point: 9.8009

>NTDB_id=123253 CVOL_RS02930 WP_039665369.1 554261..556054(-) (uvrC) [Campylobacter volucris LMG 24379]
MLENDLKNLPNLPGIYQYFDQNGKLLYIGKAKNLKNRIKSYFIFTPKILPNPNNNLRIQKMISQTHHLEFITTNSEADAL
ILENSFIKQLHPKYNILLRDDKTYPYIYIDLNEDFPRFEITRKIIKKNKIKYFGPFFKGAKDLLDALYLSFALRQKKSCK
QACLFYQIKRCAAPCENKISKQEYDKIIQKATGAILNSSILIKNLEKKMLDFAQNENYEEAAKIRDQIQTLKDISVKVQI
DVAKLENFDIFALCVKNGILSLVRFVINNGKMISSNHKIITLKDQDDFNLNEIYKQYILENFPPNMPINSTKIYIHEYFE
DLQILEDILSKRFFKKIHIKVPKLGEKKKICDLALENAKINIEKYLKNEDYTILKNIKDTFGLQNYPNTIEIFDTSHYQG
DASVGAMVVFKDLKFSKTSYKHYHLSYKNDYEQMFQMLSKRALSFDKTPPPDLWLIDGGDALLKLAKDIIKSSGANVDIL
AISKEKINLKAHRAKGSAKDKIYTEDKIFSLLPTDKNLQFLQKLRDEAHRFAISFHQKTKRKQDLQNSKLLQLGISQGNI
KKLLDYFGSFEQIFQANFDDIKTVCNEKIANLIKENI

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=123253 CVOL_RS02930 WP_039665369.1 554261..556054(-) (uvrC) [Campylobacter volucris LMG 24379]
ATGCTAGAAAATGATTTAAAAAATTTACCCAATCTTCCTGGAATTTATCAGTATTTTGATCAAAATGGAAAATTACTTTA
TATTGGAAAAGCAAAAAATCTTAAAAATCGCATAAAAAGTTATTTTATTTTTACTCCTAAAATTTTACCCAATCCAAACA
ATAATCTAAGAATTCAAAAAATGATTTCTCAAACCCATCATCTTGAATTTATTACCACAAACAGCGAAGCTGATGCTTTG
ATTTTAGAAAACTCATTTATAAAACAACTCCATCCAAAATATAATATTTTATTGCGAGATGATAAAACTTATCCTTATAT
TTACATAGATTTAAATGAAGATTTTCCAAGATTTGAAATCACTAGAAAAATCATCAAAAAAAATAAAATCAAATATTTTG
GACCATTTTTTAAAGGTGCTAAAGATCTTTTAGATGCTTTGTATCTAAGCTTTGCACTTAGGCAGAAAAAATCTTGCAAG
CAAGCATGTTTGTTTTACCAAATAAAACGATGCGCTGCTCCATGTGAAAATAAAATCTCCAAACAAGAATACGATAAAAT
CATACAAAAAGCTACTGGAGCTATTTTAAATTCTTCTATATTAATTAAAAATTTAGAAAAGAAAATGCTTGATTTTGCTC
AAAATGAAAACTACGAAGAAGCAGCTAAAATAAGAGATCAAATTCAAACCTTAAAAGATATTAGTGTTAAAGTTCAAATT
GATGTGGCAAAATTAGAAAATTTTGACATTTTTGCTCTTTGTGTTAAAAATGGCATTCTTTCTTTGGTGCGATTTGTGAT
TAATAATGGAAAAATGATTAGTTCTAACCATAAAATTATCACTCTTAAAGATCAAGATGATTTTAATCTAAATGAAATTT
ATAAACAATATATATTAGAGAATTTTCCACCAAATATGCCGATTAATTCTACTAAAATTTATATACACGAGTATTTTGAA
GATTTACAAATATTAGAAGATATTCTCTCTAAAAGGTTTTTTAAAAAAATTCACATTAAAGTACCAAAATTAGGGGAGAA
AAAGAAAATTTGTGATTTGGCCTTAGAAAATGCAAAAATTAATATTGAAAAATATTTAAAAAACGAAGATTATACTATTT
TAAAAAATATAAAAGATACTTTTGGTTTGCAAAATTATCCAAACACTATAGAAATTTTTGATACTTCTCATTATCAAGGT
GATGCAAGTGTTGGAGCAATGGTTGTTTTTAAAGATTTAAAATTTAGCAAAACTTCTTACAAGCATTATCATTTATCCTA
TAAAAATGATTATGAGCAAATGTTTCAAATGCTAAGCAAAAGAGCTTTATCTTTTGATAAAACCCCTCCTCCTGATCTTT
GGCTTATAGATGGGGGAGATGCTCTTTTAAAGCTTGCCAAAGATATCATAAAAAGTTCAGGAGCAAATGTGGATATTTTA
GCCATATCTAAAGAAAAAATTAACCTTAAAGCTCATAGGGCAAAAGGTAGCGCTAAAGATAAAATTTACACAGAAGATAA
AATTTTTTCTCTTTTACCTACAGATAAAAATTTGCAATTTTTGCAAAAATTAAGAGATGAAGCTCATCGTTTTGCGATAA
GTTTTCATCAAAAAACAAAAAGAAAGCAAGATTTACAAAATTCTAAATTATTACAACTTGGAATTTCTCAAGGAAATATC
AAAAAACTTTTAGATTATTTTGGTTCATTTGAGCAAATTTTTCAAGCTAATTTTGATGATATTAAAACAGTATGCAATGA
AAAAATAGCAAATTTAATCAAGGAAAATATATGA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(13-95)

UvrB/uvrC motif (UVR)

(201-233)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(379-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

49.244

99.665

0.491

Multiple sequence alignment