Detailed information NTG0123251

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CVOL_RS01900
• Genome accession: NZ_CP007774
• Coordinates: 353237..354622 (+)
• Length: 461 a.a.
• NCBI ID: WP_039666237.1
• Uniprot ID: -
• Organism: Campylobacter volucris LMG 24379
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 348237..359622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVOL_RS01885 (CVOL_0377)	-	348612..349256 (+)	645	WP_039665202.1	HAD family hydrolase	-
CVOL_RS01890 (CVOL_0378)	nifJ	349376..352930 (+)	3555	WP_039665203.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
CVOL_RS01895 (CVOL_0379)	-	352933..353259 (+)	327	WP_039665204.1	hypothetical protein	-
CVOL_RS01900 (CVOL_0380)	ctsD	353237..354622 (+)	1386	WP_039666237.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CVOL_RS01905 (CVOL_0381)	-	354603..354941 (+)	339	WP_052243152.1	transformation system, membrane protein CtsX	-
CVOL_RS01910 (CVOL_0382)	-	354928..356487 (+)	1560	WP_039665205.1	transformation system, type II secretion system ATPase CtsE	-
CVOL_RS01915 (CVOL_0383)	-	356484..357647 (+)	1164	WP_132038053.1	type II secretion system F family protein	-
CVOL_RS01920 (CVOL_0384)	-	357644..358399 (-)	756	WP_039665207.1	TSUP family transporter	-
CVOL_RS01925 (CVOL_0385)	-	358384..359133 (-)	750	WP_039665208.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 52395.19 Da
• Isoelectric Point: 8.2312

>NTDB_id=123251 CVOL_RS01900 WP_039666237.1 353237..354622(+) (ctsD) [Campylobacter volucris LMG 24379]
MIILLFISICFTQVFANSCHQRVFDISVDSKSTLLEILNELGKECGFSIIVKDSLAQKKLNTAQNYLHIRKMSLREIFNL
LLKENNLAYDYEKNILKIYGKVVKTFKIHYISSIREGQSITKASVDSRPRQGEYEHSNKEADNLVISTDRFDFWEKIAEE
IQALLDENTTKPIINTNAGIITLQATPYEITRVQNYLNDLNKRLKKQVLIDVSIVAVHLNKNHSSGINWQELAFRLNGDD
KDFIINKGGIKNINLKANIQTQAIINLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGSTISETYN
NYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVEDSQTLILGGLISKNSI
NNQNEINLLSKIPIFGLLFQGKQNIEDVSEIVFIIKPTIIKEDKKILNLKDLGFKNEDHMF

Nucleotide

• Length: 1386 bp

>NTDB_id=123251 CVOL_RS01900 WP_039666237.1 353237..354622(+) (ctsD) [Campylobacter volucris LMG 24379]
ATAATAATATTATTATTTATTAGTATATGTTTTACTCAAGTTTTTGCAAATTCATGTCATCAAAGGGTTTTTGATATCAG
TGTTGATTCTAAAAGTACATTATTAGAAATTTTAAATGAGCTTGGTAAAGAATGTGGCTTTAGTATCATTGTAAAAGATT
CTTTAGCGCAAAAGAAACTAAATACCGCTCAAAATTATCTTCACATTAGAAAAATGTCTTTAAGAGAAATTTTTAATCTT
TTGTTGAAAGAAAATAATCTTGCTTATGATTATGAAAAAAATATTTTAAAAATTTATGGAAAAGTAGTAAAGACTTTTAA
AATTCATTATATTAGCTCTATTAGAGAAGGACAAAGTATCACTAAAGCTTCAGTGGATTCAAGACCAAGACAAGGAGAAT
ATGAACATTCTAATAAAGAAGCAGATAATTTGGTTATAAGCACTGATAGGTTTGATTTTTGGGAGAAAATTGCAGAAGAA
ATTCAAGCTTTACTTGATGAAAATACTACTAAGCCCATTATTAATACCAATGCGGGAATCATTACCTTACAAGCTACTCC
ATATGAAATTACAAGGGTGCAAAATTATTTAAATGATTTAAATAAACGATTGAAAAAACAAGTTTTAATTGATGTGAGTA
TAGTTGCTGTACATTTAAATAAAAATCATTCTAGTGGAATTAATTGGCAAGAACTCGCTTTTAGGTTAAATGGCGATGAT
AAAGATTTTATCATAAATAAAGGTGGTATTAAAAATATCAATTTAAAAGCAAATATCCAAACTCAAGCAATTATAAATTT
ATTGCAAGAAAATGGTAAAACCACGGTGCTTTCTAATCCAAAACTTATGGCTTTAAATAATCAACAAGCAATTATTTCTA
TAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAAGGCACTGAAAATGGAAGTACAATTAGTGAAACTTATAAT
AATTATTCTATTTTTGTAGGAATTTTACTTAATATTTTGCCAGAAATTTCAGATGATCATAAGATTATGCTTAGGATAAA
TCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATCGTCAAAATAAACCAAGAAATATTGCGCCCGATACTATAC
AAAAAAAGCTTTCAACTGTTGTAGAAGTGGAAGATTCTCAAACTTTAATTTTAGGTGGTTTGATTAGTAAAAATAGCATT
AACAATCAAAATGAAATCAATTTACTTTCTAAAATACCTATTTTTGGATTATTATTTCAAGGTAAGCAAAATATAGAAGA
TGTTAGCGAAATTGTTTTTATCATCAAGCCAACTATAATCAAAGAAGATAAAAAGATACTAAATTTAAAAGATTTGGGTT
TTAAAAATGAAGATCATATGTTTTAG

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (267-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	59.701	100	0.607