Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CSUB8523_RS07585 Genome accession   NZ_CP007773
Coordinates   1476339..1477253 (-) Length   304 a.a.
NCBI ID   WP_043020099.1    Uniprot ID   -
Organism   Campylobacter subantarcticus LMG 24377     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471339..1482253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUB8523_RS07560 (CSUB8523_1504) mgtE 1471677..1473020 (+) 1344 WP_043020096.1 magnesium transporter -
  CSUB8523_RS07565 (CSUB8523_1505) tpx 1473035..1473550 (+) 516 WP_043020097.1 thiol peroxidase -
  CSUB8523_RS07570 (CSUB8523_1506) - 1473547..1474932 (-) 1386 WP_039664409.1 replicative DNA helicase -
  CSUB8523_RS07575 (CSUB8523_1507) cysK 1474945..1475847 (-) 903 WP_043020098.1 cysteine synthase A -
  CSUB8523_RS07580 (CSUB8523_1508) - 1475945..1476247 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  CSUB8523_RS07585 (CSUB8523_1509) waaF 1476339..1477253 (-) 915 WP_043020099.1 heptosyltransferase II Regulator
  CSUB8523_RS07590 (CSUB8523_1510) - 1477304..1478104 (+) 801 WP_043020100.1 glycosyltransferase family 2 protein -
  CSUB8523_RS07595 (CSUB8523_1511) - 1478109..1480031 (-) 1923 WP_235362554.1 motility associated factor glycosyltransferase family protein -
  CSUB8523_RS07600 (CSUB8523_1512) - 1480031..1480795 (-) 765 WP_043020102.1 glucosamine-6-P synthase, glutaminase subunit PtmA -
  CSUB8523_RS07605 (CSUB8523_1513) - 1480795..1481502 (-) 708 WP_043020103.1 flagellin modification protein, acylneuraminate cytidylyltransferase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34615.80 Da        Isoelectric Point: 10.4085

>NTDB_id=123244 CSUB8523_RS07585 WP_043020099.1 1476339..1477253(-) (waaF) [Campylobacter subantarcticus LMG 24377]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQVLVENKKQRYRQILKARKNLGKFDLAFS
FRSAFSSKIILSLIKAKKRFYFDKNILKEEHQVSKYLNFTEKALNFKATSNVLKLPIKAKSTRKILGVNAGAHFGSAKRW
EASYFAQVAKEFSFTHQILIFGIEREREICNEIEHLLSKAGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQENAKIAHLDLVCMPCMQKVCPLKHHKCMKELKPEVVINLAKAFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=123244 CSUB8523_RS07585 WP_043020099.1 1476339..1477253(-) (waaF) [Campylobacter subantarcticus LMG 24377]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGTGATGCAGTGATGGCTAGTGCAGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGCACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAGTCT
TAGTAGAAAATAAAAAGCAAAGATATAGACAAATTTTAAAAGCTAGAAAAAACCTTGGCAAATTTGATCTAGCTTTTTCA
TTTCGCTCGGCATTTTCAAGCAAGATTATTTTAAGTCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAGCATCAAGTCTCAAAGTACTTAAATTTCACAGAAAAAGCTTTGAATTTTAAAGCCACTTCAAATGTTTTAA
AACTCCCTATAAAAGCAAAGTCAACTCGAAAAATTTTAGGTGTAAATGCAGGCGCACATTTTGGAAGTGCTAAAAGATGG
GAAGCAAGCTATTTTGCCCAAGTTGCAAAAGAATTTAGCTTCACCCATCAAATTTTAATCTTTGGGATAGAAAGAGAGAG
AGAAATTTGTAATGAAATTGAACATTTACTTTCAAAAGCAGGTATAAAGGCAAAAAATCTTTGTGGTAAAACCAGCATTT
ATACTTTATGTAAAAACATTTCTATGCTTGATTTGCTCATCACAAACGACAGCGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTGAAAACAGTAGCTATTTTTGGATCAACCAAATTCAGTCAAACCTCACCTTGGCAAGAAAACGCTAAGATAGCTCA
TCTTGATCTAGTTTGTATGCCTTGCATGCAAAAAGTTTGCCCTTTAAAACACCACAAATGTATGAAAGAATTAAAACCCG
AAGTGGTAATAAATTTAGCAAAAGCATTTTTTTAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.63

100

0.661

Multiple sequence alignment