Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CSUB8523_RS02035 Genome accession   NZ_CP007773
Coordinates   381489..382880 (+) Length   463 a.a.
NCBI ID   WP_043019464.1    Uniprot ID   -
Organism   Campylobacter subantarcticus LMG 24377     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376489..387880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUB8523_RS02020 (CSUB8523_0405) - 376872..377516 (+) 645 WP_043019462.1 HAD family hydrolase -
  CSUB8523_RS02025 (CSUB8523_0406) nifJ 377634..381188 (+) 3555 WP_043019463.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CSUB8523_RS09485 (CSUB8523_0407) - 381221..381517 (+) 297 WP_052242966.1 hypothetical protein -
  CSUB8523_RS02035 (CSUB8523_0408) ctsD 381489..382880 (+) 1392 WP_043019464.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CSUB8523_RS02040 (CSUB8523_0409) - 382861..383190 (+) 330 WP_052242967.1 transformation system, membrane protein CtsX -
  CSUB8523_RS02045 (CSUB8523_0410) - 383183..384697 (+) 1515 WP_052242968.1 transformation system, type II secretion system ATPase CtsE -
  CSUB8523_RS02050 (CSUB8523_0411) - 384694..385854 (+) 1161 WP_043019465.1 transformation system, type II secretion system membrane protein CtsF -
  CSUB8523_RS02055 (CSUB8523_0412) - 385851..386603 (-) 753 WP_043019466.1 TSUP family transporter -
  CSUB8523_RS02060 (CSUB8523_0413) - 386588..387337 (-) 750 WP_039662976.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52596.52 Da        Isoelectric Point: 8.7134

>NTDB_id=123234 CSUB8523_RS02035 WP_043019464.1 381489..382880(+) (ctsD) [Campylobacter subantarcticus LMG 24377]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLARERLNYTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFNFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKSGVKNINLKANVEIKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPIFGALFQGKQNLEDTSEIVFIIKPSLIKADKKILSLKDLGFMHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=123234 CSUB8523_RS02035 WP_043019464.1 381489..382880(+) (ctsD) [Campylobacter subantarcticus LMG 24377]
ATGAAAAAAATAATATTTTTGTTCATTAGTATTTTAACTTTTACAAATGTTTTTGCCTCACAATGTCATCAACGCTTTTT
TGATATTAGTGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCACTAGCTAGAGAAAGGTTAAATTATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGGGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGCTCTATTAGAGAAGGGCAGAGTATTACTAAAGCTTCGGTGGACTCAAGACCTAAAC
AAGGTGATTATGATAGTGCTAAAGAGGCGGATAATTTAGTTATTAGTACGGATAAATTTAATTTTTGGGAAAAAATTTCA
GAAGAAATTCAAGCTTTATTAGATGAAAATACAACCAAACCTATTATCAATACTAACGCAGGGATTATTACTTTAAATGC
TACTTTGTATGAGCTTGCAAGAGTTGAAAAATATCTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGCATAGTTGCAGTACATTTAAATAAAAGCCATTCAAGCGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAAGTGGTGTTAAAAATATTAATCTTAAAGCTAATGTTGAAATTAAGGCTATTTT
AAATTTATTACAAGAAAATGGTAAAACCACTGTACTTTCTAATCCAAAACTTATGGCGCTTAATAATCAACAAGCTATTA
TCTCTATTGGCGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAGAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATTATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGCGTTGATAATCATCGTCAAAATAAGCCAAGAAATATTGCACCTGATA
CTATACAAAAAAAGCTTTCAACTGTTGTTGAAGTTGATGATGGACAAACTTTGATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGCAATCATAACGAGGTAAGTGCTTTATCTAAAATTCCAATTTTTGGTGCTTTGTTTCAAGGAAAACAAAATTT
AGAAGATACTAGTGAAATAGTGTTTATTATCAAACCAAGTTTGATAAAAGCAGATAAAAAAATACTTAGCTTGAAAGATT
TGGGATTTATGCATGAAGATGATATGTTTTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

57.051

100

0.577

Multiple sequence alignment