Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CSUB8521_RS07060 Genome accession   NZ_CP007772
Coordinates   1399703..1400617 (-) Length   304 a.a.
NCBI ID   WP_039664411.1    Uniprot ID   A0A0A8HB78
Organism   Campylobacter subantarcticus LMG 24374     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1394703..1405617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUB8521_RS07035 (CSUB8521_1403) mgtE 1395040..1396383 (+) 1344 WP_039664407.1 magnesium transporter -
  CSUB8521_RS07040 (CSUB8521_1404) tpx 1396397..1396915 (+) 519 WP_039664408.1 thiol peroxidase -
  CSUB8521_RS07045 (CSUB8521_1405) - 1396912..1398297 (-) 1386 WP_039664409.1 replicative DNA helicase -
  CSUB8521_RS07050 (CSUB8521_1406) cysK 1398310..1399212 (-) 903 WP_039664410.1 cysteine synthase A -
  CSUB8521_RS07055 (CSUB8521_1407) - 1399309..1399611 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  CSUB8521_RS07060 (CSUB8521_1408) waaF 1399703..1400617 (-) 915 WP_039664411.1 heptosyltransferase II Regulator
  CSUB8521_RS07065 (CSUB8521_1409) - 1400669..1401469 (+) 801 WP_039664412.1 glycosyltransferase family 2 protein -
  CSUB8521_RS07070 (CSUB8521_1411) - 1401474..1403418 (-) 1945 Protein_1408 motility associated factor glycosyltransferase family protein -
  CSUB8521_RS07075 (CSUB8521_1412) - 1403406..1404170 (-) 765 WP_039664413.1 glucosamine-6-P synthase, glutaminase subunit PtmA -
  CSUB8521_RS07080 (CSUB8521_1413) - 1404170..1404877 (-) 708 WP_039664414.1 flagellin modification protein, acylneuraminate cytidylyltransferase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34467.59 Da        Isoelectric Point: 10.2337

>NTDB_id=123227 CSUB8521_RS07060 WP_039664411.1 1399703..1400617(-) (waaF) [Campylobacter subantarcticus LMG 24374]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQVLVENKKQRYRQILKARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEEALNFKAASSILKLPIKAKSTQKILGINAGAHFGSAKRW
EASYFAQVAKEFSSTHQILIFGVESEREICNEIEHLLSKAGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLDLVCMPCMQKVCPLKHHKCMKELKPEVVINLAKAFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=123227 CSUB8521_RS07060 WP_039664411.1 1399703..1400617(-) (waaF) [Campylobacter subantarcticus LMG 24374]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGTGATGCGGTAATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
GTATCCTCAAGCTAAATTTACTTTTTATGGTTCTTTTGTCAGCACAGAGCTTTTTAAGCGTTTTGAAAATGCTCAAGTCT
TAGTAGAAAATAAAAAGCAAAGATATAGACAAATTTTAAAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCA
TTTCGCTCAGCATTTTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATCCT
AAAAGAAGAACACCAAGTTTTAAAGTACTTAAATTTCATAGAAGAAGCTTTGAATTTTAAAGCCGCTTCAAGTATTTTAA
AACTTCCTATCAAAGCAAAGTCAACTCAAAAAATTTTAGGTATAAATGCAGGTGCACATTTTGGAAGTGCTAAAAGATGG
GAGGCAAGCTATTTTGCCCAAGTTGCAAAAGAATTTAGCTCCACACACCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGCAATGAAATTGAACATTTGCTTTCAAAAGCAGGTATAAAGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAACATTTCTATGCTTGATTTGCTCATCACAAACGACAGCGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTGAAAACGGTGGCTGTTTTTGGCTCAACTAAATTTAGCCAAACCTCGCCTTGGCAAGAAAACGCTAAGATAGCTCA
TCTTGATCTAGTTTGTATGCCTTGCATGCAAAAAGTTTGCCCTTTAAAACACCACAAATGTATGAAAGAATTAAAACCCG
AAGTGGTAATAAATTTAGCAAAAGCATTTTTTTAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8HB78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.952

100

0.664

Multiple sequence alignment