Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CSUB8521_RS02090 Genome accession   NZ_CP007772
Coordinates   403775..405166 (+) Length   463 a.a.
NCBI ID   WP_039662970.1    Uniprot ID   A0A0A8H895
Organism   Campylobacter subantarcticus LMG 24374     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 398775..410166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUB8521_RS02075 (CSUB8521_0420) - 399158..399802 (+) 645 WP_039662966.1 HAD family hydrolase -
  CSUB8521_RS02080 (CSUB8521_0421) nifJ 399920..403474 (+) 3555 WP_039662968.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CSUB8521_RS08965 (CSUB8521_0422) - 403492..403803 (+) 312 WP_148308634.1 hypothetical protein -
  CSUB8521_RS02090 (CSUB8521_0423) ctsD 403775..405166 (+) 1392 WP_039662970.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CSUB8521_RS02095 (CSUB8521_0424) - 405147..405476 (+) 330 WP_052242967.1 transformation system, membrane protein CtsX -
  CSUB8521_RS02100 (CSUB8521_0425) - 405469..406983 (+) 1515 WP_052242968.1 transformation system, type II secretion system ATPase CtsE -
  CSUB8521_RS02105 (CSUB8521_0426) - 406980..408140 (+) 1161 WP_039662972.1 transformation system, type II secretion system membrane protein CtsF -
  CSUB8521_RS02110 (CSUB8521_0427) - 408137..408889 (-) 753 WP_039662974.1 TSUP family transporter -
  CSUB8521_RS02115 (CSUB8521_0428) - 408874..409623 (-) 750 WP_039662976.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52536.46 Da        Isoelectric Point: 8.7134

>NTDB_id=123217 CSUB8521_RS02090 WP_039662970.1 403775..405166(+) (ctsD) [Campylobacter subantarcticus LMG 24374]
MKKIIFLFISILTFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLARERLNYTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFNFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVKNINLKANVEIKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGATISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPIFGALFQGKQNLEDTSEIVFIIKPSLIKADKKILSLKDLGFMHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=123217 CSUB8521_RS02090 WP_039662970.1 403775..405166(+) (ctsD) [Campylobacter subantarcticus LMG 24374]
ATGAAAAAAATAATATTTTTGTTCATTAGTATTTTAACTTTTACAAATGTTTTTGCCTCACAGTGTCATCAACGCTTTTT
TGATATTAGTGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCACTAGCTAGAGAAAGGTTAAATTATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGGGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGCTCTATTAGAGAAGGGCAGAGTATTACTAAAGCTTCGGTGGACTCAAGACCTAAAC
AAGGTGATTATGATAGTGCTAAAGAGGCGGATAATTTAGTTATTAGTACGGATAAATTTAATTTTTGGGAAAAAATTTCA
GAAGAAATTCAAGCTTTATTAGATGAAAATACAACCAAACCTATTATCAATACTAACGCAGGGATTATTACTTTAAATGC
TACTTTGTATGAGCTTGCAAGAGTTGAAAAATATCTAAAAGATTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGCATAGTTGCAGTACATTTAAATAAAAGCCATTCAAGCGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAAAAATATTAATCTTAAAGCTAATGTTGAAATTAAGGCTATTTT
AAATTTATTACAAGAAAATGGTAAAACCACTGTACTTTCTAATCCAAAACTTATGGCGCTTAATAATCAACAAGCTATTA
TCTCTATTGGCGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAGAATGGTGCGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATTATGCTTAG
AATTAATCCTAGTTTGAGTGATTTTAAATATAGCGTTGATAATCATCGTCAAAATAAGCCAAGAAATATTGCACCTGATA
CTATACAAAAAAAGCTTTCAACTGTTGTTGAAGTTGATGATGGACAAACTTTGATTTTGGGTGGATTAATTAGTAAAAAT
ACGATTAGCAATCATAACGAGGTAAGTGCTTTATCTAAAATTCCAATTTTTGGTGCTTTGTTTCAAGGAAAACAAAATTT
AGAAGATACTAGTGAAATAGTGTTTATTATCAAACCAAGTTTGATAAAAGCAGATAAAAAAATACTTAGCTTGAAAGATT
TGGGATTTATGCATGAAGATGATATGTTTTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8H895

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.838

100

0.575

Multiple sequence alignment