Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | CONCH_RS05940 | Genome accession | NZ_CP007771 |
| Coordinates | 1156941..1157855 (-) | Length | 304 a.a. |
| NCBI ID | WP_039668730.1 | Uniprot ID | - |
| Organism | Campylobacter lari subsp. concheus LMG 11760 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1144764..1198213 | 1156941..1157855 | within | 0 |
Gene organization within MGE regions
Location: 1144764..1198213
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CONCH_RS05880 (CONCH_1175) | rny | 1144764..1146317 (+) | 1554 | WP_039668720.1 | ribonuclease Y | - |
| CONCH_RS05885 (CONCH_1176) | - | 1146326..1146889 (+) | 564 | WP_039668721.1 | DedA family protein | - |
| CONCH_RS05890 (CONCH_1177) | - | 1146886..1148141 (+) | 1256 | Protein_1154 | ComEC/Rec2 family competence protein | - |
| CONCH_RS05895 (CONCH_1178) | - | 1148088..1148900 (-) | 813 | WP_039668722.1 | ribonuclease BN | - |
| CONCH_RS05900 (CONCH_1179) | - | 1148900..1150282 (-) | 1383 | WP_039668723.1 | gycolate oxidase, subunit GlcD-related protein | - |
| CONCH_RS05905 (CONCH_1180) | - | 1150282..1150992 (-) | 711 | WP_371817735.1 | plasminogen-binding N-terminal domain-containing protein | - |
| CONCH_RS05910 (CONCH_1181) | - | 1151118..1152275 (+) | 1158 | WP_039668725.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| CONCH_RS05915 (CONCH_1182) | mgtE | 1152277..1153620 (+) | 1344 | WP_039668726.1 | magnesium transporter | - |
| CONCH_RS05920 (CONCH_1183) | tpx | 1153634..1154152 (+) | 519 | WP_039668727.1 | thiol peroxidase | - |
| CONCH_RS05925 (CONCH_1184) | - | 1154149..1155534 (-) | 1386 | WP_039668728.1 | replicative DNA helicase | - |
| CONCH_RS05930 (CONCH_1185) | cysK | 1155547..1156449 (-) | 903 | WP_039668729.1 | cysteine synthase A | - |
| CONCH_RS05935 (CONCH_1186) | - | 1156547..1156849 (-) | 303 | WP_039619003.1 | HU family DNA-binding protein | - |
| CONCH_RS05940 (CONCH_1187) | waaF | 1156941..1157855 (-) | 915 | WP_039668730.1 | heptosyltransferase II | Regulator |
| CONCH_RS05945 (CONCH_1188) | - | 1157913..1158719 (+) | 807 | WP_039668731.1 | glycosyltransferase family 2 protein | - |
| CONCH_RS05950 (CONCH_1189) | - | 1158725..1159459 (+) | 735 | WP_039669078.1 | glycosyltransferase family 25 protein | - |
| CONCH_RS05955 (CONCH_1190) | - | 1159464..1160630 (+) | 1167 | WP_039668732.1 | nucleotide sugar dehydrogenase | - |
| CONCH_RS05960 (CONCH_1191) | - | 1160627..1161715 (-) | 1089 | WP_080755076.1 | hypothetical protein | - |
| CONCH_RS07760 (CONCH_1192) | - | 1161687..1163423 (-) | 1737 | WP_052239470.1 | glycosyltransferase family 2 protein | - |
| CONCH_RS08120 (CONCH_1193) | - | 1163497..1164459 (+) | 963 | WP_039668733.1 | glycosyltransferase family 2 protein | - |
| CONCH_RS05975 (CONCH_1194) | - | 1164440..1165645 (+) | 1206 | WP_039668734.1 | glycosyltransferase family 8 protein | - |
| CONCH_RS05980 (CONCH_1195) | - | 1165634..1166689 (-) | 1056 | WP_039668735.1 | glycosyltransferase family 4 protein | - |
| CONCH_RS05985 (CONCH_1196) | - | 1166686..1168233 (-) | 1548 | WP_039668736.1 | glycosyltransferase family 2 protein | - |
| CONCH_RS05990 (CONCH_1197) | - | 1168242..1169114 (-) | 873 | WP_039668737.1 | lipid A biosynthesis lauroyl acyltransferase | - |
| CONCH_RS05995 (CONCH_1198) | waaC | 1169111..1170130 (-) | 1020 | WP_039668738.1 | lipopolysaccharide heptosyltransferase I | - |
| CONCH_RS06000 (CONCH_1199) | - | 1170196..1170975 (+) | 780 | WP_039668739.1 | 3'-5' exonuclease | - |
| CONCH_RS06005 (CONCH_1200) | galE | 1171034..1172020 (+) | 987 | WP_039626879.1 | UDP-glucose 4-epimerase GalE | - |
| CONCH_RS06010 (CONCH_1201) | - | 1172014..1173708 (+) | 1695 | WP_039669081.1 | flippase | - |
| CONCH_RS06015 (CONCH_1202) | - | 1173705..1174769 (+) | 1065 | WP_039668740.1 | GalNAc alpha1-4 transferase | - |
| CONCH_RS06020 (CONCH_1203) | - | 1174771..1175871 (+) | 1101 | WP_039668741.1 | GlcNAc alpha1-4 transferase | - |
| CONCH_RS06025 (CONCH_1204) | - | 1175873..1178011 (+) | 2139 | WP_039668742.1 | oligosaccharide transferase | - |
| CONCH_RS06030 (CONCH_1205) | pglA | 1178008..1179135 (+) | 1128 | WP_039668743.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| CONCH_RS06035 (CONCH_1206) | pglC | 1179128..1179730 (+) | 603 | WP_039668744.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| CONCH_RS06040 (CONCH_1207) | pglD | 1179717..1180313 (+) | 597 | WP_039668745.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| CONCH_RS06045 (CONCH_1208) | pglE | 1180310..1181470 (+) | 1161 | WP_039668746.1 | UDP-N-acetylbacillosamine transaminase | - |
| CONCH_RS06050 (CONCH_1209) | pglF | 1181472..1183235 (+) | 1764 | WP_039668747.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| CONCH_RS06055 (CONCH_1210) | - | 1183349..1183726 (+) | 378 | WP_039619063.1 | chemotaxis response regulator CheY | - |
| CONCH_RS06060 (CONCH_1211) | - | 1183739..1184575 (+) | 837 | WP_039668748.1 | 50S ribosomal protein L11 methyltransferase | - |
| CONCH_RS06065 (CONCH_1212) | ftsH | 1184575..1186497 (+) | 1923 | WP_039619068.1 | ATP-dependent zinc metalloprotease FtsH | - |
| CONCH_RS06070 (CONCH_1213) | - | 1186497..1187114 (+) | 618 | WP_039668749.1 | phosphatidylserine decarboxylase-related protein | - |
| CONCH_RS06075 (CONCH_1214) | pssA | 1187111..1187821 (+) | 711 | WP_039668750.1 | CDP-diacylglycerol--serine O-phosphatidyltransferase | - |
| CONCH_RS06080 (CONCH_1215) | - | 1187884..1188438 (+) | 555 | WP_039668751.1 | membrane protein | - |
| CONCH_RS06090 (CONCH_1217) | - | 1188676..1190145 (+) | 1470 | WP_039668752.1 | DNA methylase | - |
| CONCH_RS06095 (CONCH_1218) | - | 1190138..1190332 (+) | 195 | WP_039668753.1 | hypothetical protein | - |
| CONCH_RS06100 (CONCH_1219) | ciaB | 1190351..1192186 (-) | 1836 | WP_039668754.1 | invasion protein CiaB | - |
| CONCH_RS06105 (CONCH_1220) | - | 1192251..1192655 (+) | 405 | WP_012661971.1 | acyl-CoA thioesterase | - |
| CONCH_RS06110 (CONCH_1221) | - | 1192720..1193649 (+) | 930 | WP_039619082.1 | ribose-phosphate pyrophosphokinase | - |
| CONCH_RS07940 | - | 1193831..1194037 (+) | 207 | WP_148308385.1 | hypothetical protein | - |
| CONCH_RS06115 (CONCH_1222) | - | 1193986..1194348 (+) | 363 | WP_039668755.1 | hypothetical protein | - |
| CONCH_RS06120 (CONCH_1223) | - | 1194341..1195261 (+) | 921 | WP_039668756.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| CONCH_RS06125 (CONCH_1226) | - | 1195672..1196082 (-) | 411 | WP_039668757.1 | hypothetical protein | - |
| CONCH_RS06130 (CONCH_1227) | ruvB | 1196170..1197180 (+) | 1011 | WP_039668758.1 | Holliday junction branch migration DNA helicase RuvB | - |
| CONCH_RS06135 (CONCH_1228) | - | 1197170..1198213 (+) | 1044 | WP_039668759.1 | AI-2E family transporter | - |
Sequence
Protein
Download Length: 304 a.a. Molecular weight: 34602.76 Da Isoelectric Point: 10.3082
>NTDB_id=123208 CONCH_RS05940 WP_039668730.1 1156941..1157855(-) (waaF) [Campylobacter lari subsp. concheus LMG 11760]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYKQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARAAKEFSSTHQILIFGVESEREICDEIEQFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQKNVKIAHLNLACMPCMQKVCSLKHHKCMKDLKPEVVINLAKTFF
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYKQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARAAKEFSSTHQILIFGVESEREICDEIEQFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQKNVKIAHLNLACMPCMQKVCSLKHHKCMKDLKPEVVINLAKTFF
Nucleotide
Download Length: 915 bp
>NTDB_id=123208 CONCH_RS05940 WP_039668730.1 1156941..1157855(-) (waaF) [Campylobacter lari subsp. concheus LMG 11760]
ATGAATATTTTTATCAACCTTCCCACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAACAAAAAACAAAGATATAAGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCTACTTCAAATGCTTTAA
AGCTTCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATCCAGGCGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCAAGCTATTTTGCAAGGGCAGCAAAAGAATTTAGCTCCACTCATCAAATTTTGATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAACAATTTCTTCTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGAGTGAAAACAGTAGCTATTTTTGGTTCGACTAAATTTAGTCAAACTTCACCTTGGCAAAAAAATGTTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCTCTTTAAAACATCACAAATGCATGAAAGACTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAAAACATTTTTTTAA
ATGAATATTTTTATCAACCTTCCCACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAACAAAAAACAAAGATATAAGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCTACTTCAAATGCTTTAA
AGCTTCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATCCAGGCGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCAAGCTATTTTGCAAGGGCAGCAAAAGAATTTAGCTCCACTCATCAAATTTTGATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAACAATTTCTTCTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGAGTGAAAACAGTAGCTATTTTTGGTTCGACTAAATTTAGTCAAACTTCACCTTGGCAAAAAAATGTTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCTCTTTAAAACATCACAAATGCATGAAAGACTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAAAACATTTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
64.65 |
100 |
0.668 |